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| Status |
Public on Oct 09, 2017 |
| Title |
RNAseq of Burkholderia pseudomallei TctR mutant, a regulator of type VI secretion |
| Organism |
Burkholderia pseudomallei |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We report the transcriptome of Burkholderia pseudomallei type VI secretion regulator TctR mutant grown in rich media compared to wild type. The RNA-seq studies confirmed the role of TctR as a negative regulator of T6SS-2, a positive regulator of T6SS-6 and suggest a potential role in regulation of the T6SS-3 and T6SS-4 gene clusters.
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| Overall design |
To identify genes regulated by TctR, wild type and tctR mutant cells were grown in LB to log phase and the transcriptomes were compared between strains.
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| Contributor(s) |
Losada L, Shae A, DeShazer D |
| Citation missing |
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| |
| Submission date |
Oct 08, 2017 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Liliana Losada |
| E-mail(s) |
lililo.brown@gmail.com
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| Organization name |
JCVI
|
| Street address |
9704 Medical Center Dr
|
| City |
Rockville |
| State/province |
MD |
| ZIP/Postal code |
20850 |
| Country |
USA |
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| Platforms (1) |
| GPL24097 |
Illumina HiSeq 2000 (Burkholderia pseudomallei) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA413621 |
| SRA |
SRP119575 |
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