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Series GSE105776 Query DataSets for GSE105776
Status Public on May 31, 2018
Title In situ Hi-C profiles of human CD4+ T cells, CD8+ T cells and B cells
Organism Homo sapiens
Experiment type Other
Summary Over recent decades, it has been proposed that DNA interactions between mammalian chromosomes play an important role in the regulation of gene expression and cell fate determination. To study how DNA interactions change between cell types, high throughput chromosome confirmation capture (Hi-C) profiles were collected from CD4+ T cells, CD8+ T cells and B cells from human subjects.
Overall design In situ HiC was performed separately on three cell types (CD4+ T cells, CD8+ T cells and B cells) from two male human subjects.
Contributor(s) Johanson TM, Coughlan HD, Smyth GK, Allan R
Citation(s) 29883495
Submission date Oct 23, 2017
Last update date Nov 03, 2021
Contact name Gordon K Smyth
Phone (+61 3) 9345 2326
Fax (+61 3) 9347 0852
Organization name Walter and Eliza Hall Institute of Medical Research
Department Bioinformatics
Lab Smyth
Street address 1G Royal Pde
City Parkville
State/province Vic
ZIP/Postal code 3052
Country Australia
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (6)
GSM2827786 CD4+ T cells 1
GSM2827787 CD4+ T cells 2
GSM2827788 CD8+ T cells 1
This SubSeries is part of SuperSeries:
GSE126117 RNA-seq, ATAC-seq and Hi-C profiles of B cells and naïve and activated T cells from human peripheral blood
BioProject PRJNA415381
SRA SRP120957

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE105776_GenomicRegions.bed.gz 431.1 Kb (ftp)(http) BED
GSE105776_RAW.tar 1.6 Gb (http)(custom) TAR (of MTX)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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