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| Status |
Public on May 31, 2018 |
| Title |
In situ Hi-C profiles of human CD4+ T cells, CD8+ T cells and B cells |
| Organism |
Homo sapiens |
| Experiment type |
Other
|
| Summary |
Over recent decades, it has been proposed that DNA interactions between mammalian chromosomes play an important role in the regulation of gene expression and cell fate determination. To study how DNA interactions change between cell types, high throughput chromosome confirmation capture (Hi-C) profiles were collected from CD4+ T cells, CD8+ T cells and B cells from human subjects.
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| |
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| Overall design |
In situ HiC was performed separately on three cell types (CD4+ T cells, CD8+ T cells and B cells) from two male human subjects.
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| |
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| Contributor(s) |
Johanson TM, Coughlan HD, Smyth GK, Allan R |
| Citation(s) |
29883495 |
| |
| Submission date |
Oct 23, 2017 |
| Last update date |
Nov 03, 2021 |
| Contact name |
Gordon K Smyth |
| E-mail(s) |
smyth@wehi.edu.au
|
| Phone |
(+61 3) 9345 2326
|
| Fax |
(+61 3) 9347 0852
|
| URL |
http://www.wehi.edu.au
|
| Organization name |
Walter and Eliza Hall Institute of Medical Research
|
| Department |
Bioinformatics
|
| Lab |
Smyth
|
| Street address |
1G Royal Pde
|
| City |
Parkville |
| State/province |
Vic |
| ZIP/Postal code |
3052 |
| Country |
Australia |
| |
|
| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
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| Samples (6)
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| This SubSeries is part of SuperSeries: |
| GSE126117 |
RNA-seq, ATAC-seq and Hi-C profiles of B cells and naïve and activated T cells from human peripheral blood |
|
| Relations |
| BioProject |
PRJNA415381 |
| SRA |
SRP120957 |
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