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GEO accession:
Series GSE108390
Query DataSets for GSE108390
Status
Public on Apr 30, 2019
Title
Systematic functional characterization of BAF mutations yields novel intra-complex synthetic lethalities
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31427792
Submission date
Dec 21, 2017
Last update date
Jan 14, 2020
Contact name
Christoph Bock
E-mail(s)
cbock@cemm.oeaw.ac.at
Organization name
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Street address
Lazarettgasse 14
City
Vienna
ZIP/Postal code
1090
Country
Austria
Platforms (1)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
Samples (162)
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More...
GSM2897095
ATAC-seq_HAP1_ACTB_r1_2471_10
GSM2897096
ATAC-seq_HAP1_ACTB_r2_2471_10
GSM2897097
ATAC-seq_HAP1_ARID1A_r1_618_10
GSM2897098
ATAC-seq_HAP1_ARID1A_r1_618_3
GSM2897099
ATAC-seq_HAP1_ARID1A_r2_618_10
GSM2897100
ATAC-seq_HAP1_ARID1A_r2_618_3
GSM2897101
ATAC-seq_HAP1_ARID1B_r1_582_7
GSM2897102
ATAC-seq_HAP1_ARID1B_r2_582_7
GSM2897103
ATAC-seq_HAP1_ARID2_r1_907_9
GSM2897104
ATAC-seq_HAP1_ARID2_r2_907_9
GSM2897105
ATAC-seq_HAP1_BCL11A_r1_2426_10
GSM2897106
ATAC-seq_HAP1_BCL11A_r2_2426_10
GSM2897107
ATAC-seq_HAP1_BCL11B_r1_2432_10
GSM2897108
ATAC-seq_HAP1_BCL11B_r2_2432_10
GSM2897109
ATAC-seq_HAP1_BCL7A_r1_2434_10
GSM2897110
ATAC-seq_HAP1_BCL7A_r2_2434_10
GSM2897111
ATAC-seq_HAP1_BCL7B_r1_4278_8
GSM2897112
ATAC-seq_HAP1_BCL7B_r2_4278_8
GSM2897113
ATAC-seq_HAP1_BRD7_r1_923_10
GSM2897114
ATAC-seq_HAP1_BRD7_r2_923_10
GSM2897115
ATAC-seq_HAP1_BRD9_r1_934_10
GSM2897116
ATAC-seq_HAP1_BRD9_r2_934_10
GSM2897117
ATAC-seq_HAP1_DPF1_r1_2779_11
GSM2897118
ATAC-seq_HAP1_DPF1_r2_2779_11
GSM2897119
ATAC-seq_HAP1_DPF2_r1_2777_4
GSM2897120
ATAC-seq_HAP1_DPF2_r2_2777_4
GSM2897121
ATAC-seq_HAP1_DPF3_r1_2776_1
GSM2897122
ATAC-seq_HAP1_DPF3_r2_2776_1
GSM2897123
ATAC-seq_HAP1_PBRM1_r1_1135_10
GSM2897124
ATAC-seq_HAP1_PBRM1_r2_1135_10
GSM2897125
ATAC-seq_HAP1_PHF10_r1_2778_11
GSM2897126
ATAC-seq_HAP1_PHF10_r2_2778_11
GSM2897127
ATAC-seq_HAP1_SMARCA2_r1_4055_12
GSM2897128
ATAC-seq_HAP1_SMARCA2_r2_4055_12
GSM2897129
ATAC-seq_HAP1_SMARCA4_r1_2878_4
GSM2897130
ATAC-seq_HAP1_SMARCA4_r1_2878_6
GSM2897131
ATAC-seq_HAP1_SMARCA4_r2_2878_4
GSM2897132
ATAC-seq_HAP1_SMARCA4_r2_2878_6
GSM2897133
ATAC-seq_HAP1_SMARCC1_r1_2476_12
GSM2897134
ATAC-seq_HAP1_SMARCC1_r2_2476_12
GSM2897135
ATAC-seq_HAP1_SMARCD1_r1_2478_6
GSM2897136
ATAC-seq_HAP1_SMARCD1_r2_2478_6
GSM2897137
ATAC-seq_HAP1_SMARCD2_r1_2782_10
GSM2897138
ATAC-seq_HAP1_SMARCD2_r2_2782_10
GSM2897139
ATAC-seq_HAP1_SMARCD3_r1_2480_12
GSM2897140
ATAC-seq_HAP1_SMARCD3_r2_2480_12
GSM2897141
ATAC-seq_HAP1_WT_r1_C631
GSM2897142
ATAC-seq_HAP1_WT_r2_C631
GSM2897151
ChIPmentation_HAP1_WT_CTCF_921-7_r1
GSM2897152
ChIPmentation_HAP1_WT_H3K27ac_1102-3_r1_t2
GSM2897153
ChIPmentation_HAP1_WT_H3K27ac_1102-3_r1_t3
GSM2897154
ChIPmentation_HAP1_WT_H3K27ac_1102-3_r1_t6
GSM2897155
ChIPmentation_HAP1_WT_H3K27ac_1102-3_r2
GSM2897156
ChIPmentation_HAP1_WT_H3K27ac_1102-3_r3
GSM2897157
ChIPmentation_HAP1_WT_H3K27ac_921-7_r2
GSM2897158
ChIPmentation_HAP1_WT_H3K27me3_1102-3_r1
GSM2897159
ChIPmentation_HAP1_WT_H3K27me3_921-7_r2
GSM2897160
ChIPmentation_HAP1_WT_H3K36me3_1102-3_r1
GSM2897161
ChIPmentation_HAP1_WT_H3K36me3_921-7_r1
GSM2897162
ChIPmentation_HAP1_WT_H3K36me3_921-7_r2
GSM2897163
ChIPmentation_HAP1_WT_H3K4me1_1102-3_r2
GSM2897164
ChIPmentation_HAP1_WT_H3K4me1_921-7_r1
GSM2897165
ChIPmentation_HAP1_WT_H3K4me1_921-7_r2
GSM2897166
ChIPmentation_HAP1_WT_H3K4me3_1102-3_r1
GSM2897167
ChIPmentation_HAP1_WT_H3K4me3_921-7_r1
GSM2897168
ChIPmentation_HAP1_WT_H3K4me3_921-7_r2
GSM2897169
ChIPmentation_HAP1_WT_H3K9me3_1102-3_r1
GSM2897170
ChIPmentation_HAP1_WT_H3K9me3_921-7_r1
GSM2897171
ChIPmentation_HAP1_WT_H3K9me3_921-7_r2
GSM2897172
ChIPmentation_HAP1_WT_IgG_1102-3_r1
GSM2897173
ChIPmentation_HAP1_WT_IgG_921-7_r1
GSM2897174
ChIPmentation_HAP1_WT_IgG_921-7_r2
GSM2897175
ChIP-seq_HAP1_WT_ARID1A_r1
GSM2897176
ChIP-seq_HAP1_WT_ARID1A_r2
GSM2897177
ChIP-seq_HAP1_WT_ARID1B_r1
GSM2897178
ChIP-seq_HAP1_WT_ARID2_NB_r1
GSM2897179
ChIP-seq_HAP1_WT_ARID2_PA5_r2
GSM2897180
ChIP-seq_HAP1_WT_BRD4_r1
GSM2897181
ChIP-seq_HAP1_WT_H3K27ac_r1
GSM2897182
ChIP-seq_HAP1_WT_IgG_r1
GSM2897183
ChIP-seq_HAP1_WT_IgG_r2
GSM2897184
ChIP-seq_HAP1_WT_Input_1x_r1
GSM2897185
ChIP-seq_HAP1_WT_Input_20_r1
GSM2897186
ChIP-seq_HAP1_WT_Input_25_r2
GSM2897187
ChIP-seq_HAP1_WT_Input_8x_r1
GSM2897188
ChIP-seq_HAP1_WT_PBRM1_r1
GSM2897189
ChIP-seq_HAP1_WT_PolII_r1
GSM2897190
ChIP-seq_HAP1_WT_SMARCA2_r1
GSM2897191
ChIP-seq_HAP1_WT_SMARCA4_r1
GSM2897192
ChIP-seq_HAP1_WT_SMARCA4_r2
GSM2897193
RNA-seq_HAP1_ACTB_r1_2471_10
GSM2897194
RNA-seq_HAP1_ACTB_r2_2471_10
GSM2897195
RNA-seq_HAP1_ACTB_r3_2471_10
GSM2897196
RNA-seq_HAP1_ARID1A_r1_618_10
GSM2897197
RNA-seq_HAP1_ARID1A_r1_618_3
GSM2897198
RNA-seq_HAP1_ARID1A_r2_618_10
GSM2897199
RNA-seq_HAP1_ARID1A_r2_618_3
GSM2897200
RNA-seq_HAP1_ARID1A_r3_618_10
GSM2897201
RNA-seq_HAP1_ARID1A_r3_618_3
GSM2897202
RNA-seq_HAP1_ARID1B_r1_582_7
GSM2897203
RNA-seq_HAP1_ARID1B_r2_582_7
GSM2897204
RNA-seq_HAP1_ARID1B_r3_582_7
GSM2897205
RNA-seq_HAP1_ARID2_r1_907_9
GSM2897206
RNA-seq_HAP1_ARID2_r2_907_9
GSM2897207
RNA-seq_HAP1_ARID2_r3_907_9
GSM2897208
RNA-seq_HAP1_BCL11A_r1_2426_10
GSM2897209
RNA-seq_HAP1_BCL11A_r2_2426_10
GSM2897210
RNA-seq_HAP1_BCL11A_r3_2426_10
GSM2897211
RNA-seq_HAP1_BCL11B_r1_2432_10
GSM2897212
RNA-seq_HAP1_BCL11B_r2_2432_10
GSM2897213
RNA-seq_HAP1_BCL11B_r3_2432_10
GSM2897214
RNA-seq_HAP1_BCL7A_r1_2434_10
GSM2897215
RNA-seq_HAP1_BCL7A_r2_2434_10
GSM2897216
RNA-seq_HAP1_BCL7A_r3_2434_10
GSM2897217
RNA-seq_HAP1_BCL7B_r1_4278_8
GSM2897218
RNA-seq_HAP1_BCL7B_r2_4278_8
GSM2897219
RNA-seq_HAP1_BCL7B_r3_4278_8
GSM2897220
RNA-seq_HAP1_BRD7_r1_923_10
GSM2897221
RNA-seq_HAP1_BRD7_r2_923_10
GSM2897222
RNA-seq_HAP1_BRD7_r3_923_10
GSM2897223
RNA-seq_HAP1_BRD9_r1_934_10
GSM2897224
RNA-seq_HAP1_BRD9_r2_934_10
GSM2897225
RNA-seq_HAP1_BRD9_r3_934_10
GSM2897226
RNA-seq_HAP1_DPF1_r1_2779_11
GSM2897227
RNA-seq_HAP1_DPF1_r2_2779_11
GSM2897228
RNA-seq_HAP1_DPF1_r3_2779_11
GSM2897229
RNA-seq_HAP1_DPF2_r1_2777_4
GSM2897230
RNA-seq_HAP1_DPF2_r2_2777_4
GSM2897231
RNA-seq_HAP1_DPF2_r3_2777_4
GSM2897232
RNA-seq_HAP1_DPF3_r1_2776_1
GSM2897233
RNA-seq_HAP1_DPF3_r2_2776_1
GSM2897234
RNA-seq_HAP1_DPF3_r3_2776_1
GSM2897235
RNA-seq_HAP1_PBRM1_r1_1135_10
GSM2897236
RNA-seq_HAP1_PBRM1_r2_1135_10
GSM2897237
RNA-seq_HAP1_PBRM1_r3_1135_10
GSM2897238
RNA-seq_HAP1_PHF10_r1_2778_11
GSM2897239
RNA-seq_HAP1_PHF10_r2_2778_11
GSM2897240
RNA-seq_HAP1_PHF10_r3_2778_11
GSM2897241
RNA-seq_HAP1_SMARCA2_r1_4055_12
GSM2897242
RNA-seq_HAP1_SMARCA2_r2_4055_12
GSM2897243
RNA-seq_HAP1_SMARCA2_r3_4055_12
GSM2897244
RNA-seq_HAP1_SMARCA4_r1_2878_4
GSM2897245
RNA-seq_HAP1_SMARCA4_r1_2878_6
GSM2897246
RNA-seq_HAP1_SMARCA4_r2_2878_4
GSM2897247
RNA-seq_HAP1_SMARCA4_r2_2878_6
GSM2897248
RNA-seq_HAP1_SMARCA4_r3_2878_4
GSM2897249
RNA-seq_HAP1_SMARCA4_r3_2878_6
GSM2897250
RNA-seq_HAP1_SMARCC1_r1_2476_12
GSM2897251
RNA-seq_HAP1_SMARCC1_r2_2476_12
GSM2897252
RNA-seq_HAP1_SMARCC1_r3_2476_12
GSM2897253
RNA-seq_HAP1_SMARCD1_r1_2478_6
GSM2897254
RNA-seq_HAP1_SMARCD1_r2_2478_6
GSM2897255
RNA-seq_HAP1_SMARCD1_r3_2478_6
GSM2897256
RNA-seq_HAP1_SMARCD2_r1_2782_10
GSM2897257
RNA-seq_HAP1_SMARCD2_r2_2782_10
GSM2897258
RNA-seq_HAP1_SMARCD2_r3_2782_10
GSM2897259
RNA-seq_HAP1_SMARCD3_r1_2480_12
GSM2897260
RNA-seq_HAP1_SMARCD3_r2_2480_12
GSM2897261
RNA-seq_HAP1_SMARCD3_r3_2480_12
GSM2897262
RNA-seq_HAP1_WT_r1_C631
GSM2897263
RNA-seq_HAP1_WT_r2_C631
GSM2897264
RNA-seq_HAP1_WT_r3_C631
This SuperSeries is composed of the following SubSeries:
GSE108386
Systematic functional characterization of BAF mutations yields novel intra-complex synthetic lethalities [ATAC-Seq]
GSE108387
Systematic functional characterization of BAF mutations yields novel intra-complex synthetic lethalities [ChIP-Seq]
GSE108388
Systematic functional characterization of BAF mutations yields novel intra-complex synthetic lethalities [RNA-Seq]
Relations
BioProject
PRJNA427139
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TXT
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