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GEO accession:
Series GSE108852
Query DataSets for GSE108852
Status
Public on Nov 09, 2018
Title
N6-methyladenosine-mediated structural changes are associated with transcript cleavage and stability in Arabidopsis
Organism
Arabidopsis thaliana
Experiment type
Expression profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
30380407
,
32817553
Submission date
Jan 08, 2018
Last update date
Sep 21, 2020
Contact name
Stephen James Anderson
E-mail(s)
sandersonrbt@gmail.com
Organization name
University of Pennsylvania
Department
Biology
Lab
Brian Gregory
Street address
433 South University Avenue
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Platforms (1)
GPL13222
Illumina HiSeq 2000 (Arabidopsis thaliana)
Samples (50)
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GSM2913047
WT mRNA-seq rep1
GSM2913048
WT mRNA-seq rep2
GSM2913049
WT mRNA-seq rep3
GSM2913050
WT mRNA-seq rep4
GSM2913051
mta mRNA-seq rep1
GSM2913052
mta mRNA-seq rep2
GSM2913053
mta mRNA-seq rep3
GSM2913054
mta mRNA-seq rep4
GSM2913055
WT rep1 m6A IP supernatant
GSM2913056
WT rep1 m6A IP m6A+ fraction
GSM2913057
WT rep2 m6A IP supernatant
GSM2913058
WT rep2 m6A IP m6A+ fraction
GSM2913059
mta rep1 m6A IP supernatant
GSM2913060
mta rep1 m6A IP m6A+ fraction
GSM2913061
mta rep2 m6A IP supernatant
GSM2913062
mta rep2 m6A IP m6A+ fraction
GSM2913063
mta GMUCT rep1
GSM2913064
mta GMUCT rep2
GSM2913065
Col0 rep1 ssRNase structure-only
GSM2913066
Col0 rep1 dsRNase structure-only
GSM2913067
Col0 rep1 ssRNase protein-bound
GSM2913068
Col0 rep1 dsRNase protein-bound
GSM2913069
Col0 rep2 ssRNase structure-only
GSM2913070
Col0 rep2 dsRNase structure-only
GSM2913071
Col0 rep2 ssRNase protein-bound
GSM2913072
Col0 rep2 dsRNase protein-bound
GSM2913073
mta rep1 ssRNase structure-only
GSM2913074
mta rep1 dsRNase structure-only
GSM2913075
mta rep1 ssRNase protein-bound
GSM2913076
mta rep1 dsRNase protein-bound
GSM2913077
mta rep2 ssRNase structure-only
GSM2913078
mta rep2 dsRNase structure-only
GSM2913079
mta rep2 ssRNase protein-bound
GSM2913080
mta rep2 dsRNase protein-bound
GSM3228269
Control mRNA-seq rep1
GSM3228270
Control mRNA-seq rep2
GSM3228272
Salt mRNA-seq rep1
GSM3228273
Salt mRNA-seq rep2
GSM3228382
Control GMUCT Rep1
GSM3228383
Control GMUCT Rep2
GSM3228385
Salt GMUCT Rep1
GSM3228386
Salt GMUCT Rep2
GSM3228460
Control m6A IP Rep 1
GSM3228463
Control m6A IP Rep 2
GSM3228466
Salt m6A IP Rep 1
GSM3228470
Salt m6A IP Rep 2
GSM3228472
Control m6A Supernatant Rep 1
GSM3228474
Control m6A Supernatant Rep 2
GSM3228476
Salt m6A Supernatant Rep 1
GSM3228478
Salt m6A Supernatant Rep 2
This SuperSeries is composed of the following SubSeries:
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GSE108764
mRNA sequencing of 4 week old leaves in Arabidopsis wild type and ABI3:MTA
GSE108765
Profiling of N6-methyladenosine (m6A) in Arabidopsis wild type and ABI3:MTA
GSE108766
GMUCT sequencing of 4 week old leaves in Arabidopsis ABI3:MTA plants
GSE108767
Protein-interaction profile sequencing of 4 week old leaves in Arabidopsis ABI3:MTA plants.
GSE116332
mRNA sequencing of 4 week old leaves in salt-treated and control Arabidopsis
GSE116333
GMUCT sequencing of 4 week old leaves in salt-treated and control Arabidopsis
GSE116334
Profiling of N6-methyladenosine (m6A) in salt-treated and control Arabidopsis
Relations
BioProject
PRJNA428948
Download family
Format
SOFT formatted family file(s)
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MINiML formatted family file(s)
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE108852_RAW.tar
3.2 Mb
(http)
(custom)
TAR (of NARROWPEAK, TXT)
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