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Series GSE109144 Query DataSets for GSE109144
Status Public on Jul 12, 2018
Title Genome-wide maps of H2Bub and H2B states
Organism Saccharomyces cerevisiae
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We compare patterns of H2Bub and H2B across genes in WT, ubp8 KO and Dot1 OE cells
 
Overall design Generate profiles of H2Bub and used H2B as a control
 
Contributor(s) Vlaming H, Korthout T
Citation(s) 30203048
Submission date Jan 12, 2018
Last update date Mar 13, 2019
Contact name Tessy Korthout
E-mail(s) t.korthout@nki.nl
Phone +31205122345
Organization name The Netherlands Cancer Institute
Department Gene Regulation
Lab Fred van Leeuwen
Street address Plesmanlaan 121
City Amsterdam
State/province Noord-Holland
ZIP/Postal code 1006 BE
Country Netherlands
 
Platforms (1)
GPL13821 Illumina HiSeq 2000 (Saccharomyces cerevisiae)
Samples (12)
GSM2933045 ChIPseq_H2Bub_WT_NKI6061_1
GSM2933046 ChIPseq_H2Bub_WT_NKI6061_2
GSM2933047 ChIPseq_H2Bub_ubp8KO_NKI4656_1
Relations
BioProject PRJNA429770
SRA SRP129008

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE109144_RAW.tar 465.0 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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