GEO Accession viewer

GSE33466	Open chromatin maps of genetically different yeast strains
GSE33712	Global analysis of mRNA decay intermediates in Saccharomyces cerevisiae
GSE33756	tRNAs marked with CCACCA are targeted for degradation
GSE33786	Intrinsic Coupling of Lagging Strand Synthesis to Chromatin Assembly
GSE34082	High-resolution view of the yeast meiotic program revealed by ribosome profiling
GSE36334	Co-dependency of H2B monoubiquitination and nucleosome re-assembly on Chd1
GSE39074	Roles for Transcript Leaders in Translation and mRNA Decay Revealed by Transcript Leader Sequencing
GSE39128	Saccharomyces cerevisiae Transcript Isoform mapping
GSE39331	Dynamics of yeast ISWI and CHD chromatin remodeler genomic association
GSE39430	Dynamics of yeast ISWI and CHD chromatin remodeler genomic association (part 1)
GSE39431	Dynamics of yeast ISWI and CHD chromatin remodeler genomic association (part 2)
GSE40046	Transcriptome-wide Analysis of Exosome Targets in the Budding Yeast Saccharomyces cerevisiae
GSE40110	Saccharomyces cerevisiae 3' poly(A) site mapping
GSE40255	The p23 molecular chaperone and GCN5 acetylase jointly modulate protein-DNA dynamics and open chromatin status.
GSE40696	Quantitative, genome-wide analysis of eukaryotic replication initiation and termination
GSE40905	Transcription profile analysis of S. cerevisiae ZTW1 wild-type and mutant strains
GSE41017	Comparison of the genomic structures and transcription between S. cerevisiae strains ZTW1 and ZGR3
GSE41424	Histone H3K4 Demethylation is Negatively Regulated by Histone H3 Acetylation in S. cerevisiae
GSE41590	Genome-wide translational changes induced by the prion [PSI+]
GSE42554	Decoupling epigenetic and genetic effects through systematic analysis of gene position
GSE42971	The yeast Snt2 protein helps coordinate the transcriptional response to hydrogen-peroxide mediated oxidative stress (H2O2)
GSE42983	The yeast Snt2 protein helps coordinate the transcriptional response to hydrogen-peroxide mediated oxidative stress (RNA-seq)
GSE43001	The yeast Snt2 protein helps coordinate the transcriptional response to hydrogen-peroxide mediated oxidative stress (rapamycin or DMSO)
GSE43002	The yeast Snt2 protein helps coordinate the transcriptional response to hydrogen-peroxide mediated oxidative stress
GSE43747	Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae
GSE44200	Mot1 redistributes TBP from TATA-containing to TATA-less promoters
GSE44219	Competition between pre-mRNAs for a limiting splicing machinery drives global changes in splicing
GSE44312	Gene expression is a circular process
GSE44586	Genome-wide nucleosome, TFIIIC and TFIIIB occupancies in Saccharomyces cerevisiae
GSE44959	CLIP-seq of S. cerevisiae Drn1-TAP and Dbr1-TAP
GSE45672	High-resolution mapping of transcription factor binding sites on native chromatin
GSE45803	Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
GSE46140	Sacharomyces cerevisiae Transcript Isoform mapping (rrp6)
GSE46142	Global Analysis of Yeast mRNPs
GSE46535	Transcriptional impact of removing H2A.Z
GSE46742	A transcriptome-wide atlas of RNP compositions reveals diverse classes of mRNAs and lncRNAs
GSE47023	Nucleosome loss leads to global transcriptional upregulation and genomic instability during yeast replicative aging
GSE47787	Quantitative transcriptome analysis of a high-GSH producing Saccharomyces cerevisiae and the wild type based on the second generation sequencing.
GSE48212	High throughput sequencing enables detailed analysis of S. cerevisiae DNA replication
GSE48299	Spo11-oligo mapping in zip3 mutants
GSE48860	Saccharomyces cerevisiae promoter library
GSE48888	Global signatures of protein binding on structural RNAs in Saccharomyces cerevisiae
GSE49026	SMORE-seq maps both ends of transcripts and identifies widespread promoter-associated non-coding RNA governed by TATA elements.
GSE49372	RNA sequencing of pheromone stimulated and unstimulated MATa and MATα Saccharomyces cerevisiae
GSE49512	Genome-wide nucleosome maps for wild type and Rsc8-depleted Saccharomyces cerevisiae
GSE49966	Spliceosome-Mediated-Decay (SMD) regulates expression of non-intronic genes in budding yeast
GSE50049	Evolution at two regulatory levels in yeast
GSE51164	Ribosome profiling of whi3 mutant yeast
GSE51166	WHI3
GSE51251	Widespread Misinterpretable ChIP-seq Bias in Yeast
GSE51361	High resolution mapping of modified nucleobases in DNA using excision repair enzymes
GSE51532	Protein Kinase A Regulates Gene-Specific Translational Adaptation in Differentiating Yeast
GSE51583	High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis
GSE51645	Differential gene expression in Malaysian and Wine/European yeast isolates
GSE51809	Heterochronic meiotic misexpression in an interspecific yeast hybrid
GSE52000	The Ino80 complex prevents invasion of euchromatin into silent chromatin
GSE52086	Transcriptome analysis of yeast methyltransferase mutants set5∆, set1∆ and set5∆set1∆
GSE52119	Evolution of Translation Regulation in budding Yeast
GSE52242	Deletion of conserved protein phosphatases reverses defects associated with mitochondrial DNA damage in Saccharomyces cerevisiae
GSE52339	A high-resolution view of transcription and chromatin states across distinct metabolic states in budding yeast
GSE52355	Nucleosome positioning in Yeast
GSE52614	Genome-wide mapping proteins at replication forks in the yeast S. cerevisiae
GSE52878	Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution
GSE52968	Ribosome profiling study of dom34 and hbs1 knockout strains using short (16-nt) and long (28-nt) monosome-protected footprints and disome-protected footprints
GSE52987	Replication profile from total DNA
GSE52997	The SAGA coactivator complex acts on the whole transcribed genome and is required for RNA polymerase II transcription [Yeast cells]
GSE53241	Context Dependency of Set1/COMPASS Mediated H3 Lysine 4 Trimethylation
GSE53268	Translation rates and 3' ends of S. cerevisiae genes
GSE53313	Determinants of ribosome density in yeast
GSE53718	MNase-seq Experiments from Saccharomyces cerevisiae
GSE53720	RNA-seq Experiments from Saccharomyces cerevisiae
GSE53721	Calorie Restricted and Non-Restricted Yeast
GSE54105	H2A.Z marks antisense promoters and has positive effects on antisense transcript levels in budding yeast
GSE54433	YHJ8 RNA-seq
GSE54524	Genome-wide nucleosome, histone and Pol II maps for wild type Saccharomyces cerevisiae induced with 3-aminotriazole (3AT)
GSE54831	Transcription Factor Regulation and Chromosome Dynamics in Pseudohyphal Growth
GSE55155	Rif1 regulates initiation timing of late replication origins throughout the S. cerevisiae genome [ChIP-Seq]
GSE55156	Rif1 regulates initiation timing of late replication origins throughout the S. cerevisiae genome
GSE55281	Genome-wide maps of the histone H3K4 demethylase Jhd2 occupany in Saccharomyces cerevisiae
GSE55400	Ribosomal footprinting and RNASeq in two strains of yeast and their diploid hybrid
GSE55419	Coordinating Expression of RNA Binding Proteins with Their mRNA Targets
GSE55717	Evolution and genetic architecture of chromatin accessibility and function in yeast
GSE55982	Native Elongating Transcript sequencing (NET-seq) in wild-type and three members of the CAF-I complex
GSE56095	Nucleosome positioning under perturbation conditions in yeast
GSE56435	Genome-wide mapping of yeast RNA polymerase II termination
GSE56622	Ribosome profiling upon glucose starvation in S. cerevisiae
GSE56939	Interrelationships between replication infidelity and genome composition
GSE57031	Transcriptional regulation by Pho23 modulates the frequency of autophagosome formation.
GSE57093	Transcriptional response of Saccharomyces cerevisiae to potassium starvation
GSE57385	Determination of decay rates across the transcriptome and identification of controlling features
GSE57617	HDACs act on ribosomal DNA to control the yeast replication program and the competition between origins for limiting initiation factors [ChIP-seq]
GSE57619	HDACs act on ribosomal DNA to control the yeast replication program and the competition between origins for limiting initiation factors
GSE57900	ChIP-exo analysis of the DNA-binding sites of the yeast transcription factor Yfl052w sequenced by Illumina
GSE57902	ChIP-exo analysis of the DNA-binding sites of the yeast transcription factor Yfl052w
GSE58200	Pseudouridine profiling reveals widespread regulated mRNA pseudouridylation in yeast and human cells
GSE58319	Strand-specific transcriptomes of Saccharomyces cerevisiae and Saccharomyces paradoxus
GSE58321	Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments
GSE58808	Break-Seq of DNA double stranded breaks in Saccharomyces cerevisiae WT and mec1 cells after exposure to hydroxyurea
GSE59003	Acetylation of histone H4 at lysine 44 facilitates meiotic recombination by creating accessible chromatin [ChIP-seq]
GSE59004	Acetylation of histone H4 at lysine 44 facilitates meiotic recombination by creating accessible chromatin [Mnase-seq]
GSE59005	Acetylation of histone H4 at lysine 44 facilitates meiotic recombination by creating accessible chromatin
GSE59370	The SAGA coactivator complex acts on the whole transcribed genome and is required for RNA polymerase II transcription
GSE59523	Asymmetric nucleosomes flank promoters in the budding yeast genome
GSE59573	Translation Inhibitors Cause Abnormalities in Ribosome Profiling Experiments
GSE60281	Combinatorial cis-regulation in Saccharomyces species
GSE60617	Heritable variation of mRNA decay rates in yeast
GSE60947	Genomewide poly(A) site mapping for YJR141W and related mutants
GSE61011	Targeting and Plasticity of Mitochondrial Proteins Revealed by Proximity-Specific Ribosome Profiling
GSE61012	Principles of ER Co-Translational Translocation Revealed by Proximity-Specific Ribosome Profiling
GSE61210	Swi/Snf dynamics on stress responsive genes is governed by competitive bromodomain interactions.
GSE61532	Dosage compensation can buffer copy-number variation in wild yeast
GSE61553	Transcription profiling of a S96xSK1 yeast cross and its pool of spores.
GSE62735	Genome-wide mapping of transcription start sites in a ∆set2 strain
GSE63120	Widespread Co-translational RNA Decay Reveals Ribosome Dynamics
GSE63163	Identification of the key genes related to oxidation stress tolerance in yeast using RNA-Seq DGE method
GSE63517	Break-Seq and RNA-seq analysis of gene expression during and after exposure to hydroxyurea in WT and mec1 cells in Saccharomyces cerevisiae
GSE65001	Genome-wide study of nuclear poly(A) binding protein Nab2p depletion
GSE65592	RSC and ISW1 Chromatin Remodelers Display Functional and Chromatin-based Promoter Antagonism [ChIP-seq]
GSE65593	RSC and ISW1 Chromatin Remodelers Display Functional and Chromatin-based Promoter Antagonism [MNase-Seq]
GSE65594	The Chromatin Remodelers RSC and ISW1 Display Functional and Chromatin-based Promoter Antagonism
GSE65764	H3K36 methylation promotes longevity by enhancing transcriptional fidelity [Yeast RNA-Seq]
GSE65766	H3K36 methylation promotes longevity by enhancing transcriptional fidelity [ChIP-Seq]
GSE65767	H3K36 methylation promotes longevity by enhancing transcriptional fidelity
GSE65889	Novel nucleosomal particles containing core histones and linker DNA but no histone H1
GSE65902	The SAGA/TREX-2 subunit Sus1 binds widely to transcribed genes and affects mRNA turnover globally
GSE65992	Glycolytic Enzymes Bind mRNA and Coalesce in G-bodies Essential for Cell Proliferation Under Hypoxic Conditions
GSE66215	Cryptic transcription is the primary driving force for nucleosome instability in Spt16 mutant cells
GSE66411	Genome-wide analysis of translational efficiency reveals distinct but overlapping functions of yeast DEAD-box RNA helicases Ded1 and eIF4A
GSE66905	In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse (Bisulfite-Seq)
GSE66907	In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse (Mnase-Seq)
GSE66908	In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse (RNA-Seq)
GSE66909	In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse (ChIP-Seq yeast)
GSE66911	In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse
GSE66979	Comparative genomics reveals Chd1 as a determinant of nucleosome spacing in vivo
GSE67064	Transcriptome-wide identification and target analysis of the Pumilio family of RNA binding proteins
GSE67163	KDM5 Lysine Demethylases Are Involved in Maintenance of 3'UTR Length [RNA-Seq]
GSE67211	KDM5 Lysine Demethylases Are Involved in Maintenance of 3'UTR Length [ChIP-Seq]
GSE67212	KDM5 Lysine Demethylases Are Involved in Maintenance of 3'UTR Length
GSE67453	ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo
GSE67483	Pol II chromatin immunoprecipitation in S. cerevisiae
GSE68016	Mapping nucleosome resolution chromosome folding in yeast by Micro-C
GSE68168	A library of native and synthetic yeast core promoters driving YFP expression
GSE68533	Regulation of Nucleosome Ejection by the SWI/SNF-Family Chromatin Remodeller RSC/Sth1
GSE68573	Structural evidence for Scc4-dependent localization of cohesin loading
GSE69115	Natural variation in non-coding regions underlying phenotypic diversity in budding yeast
GSE69400	The ISW1 and CHD1 ATP-dependent chromatin remodelers compete to set nucleosome spacing in vivo
GSE69414	Ribosome profiling study of rli1 depeletion strain
GSE69472	RNA Proximity Ligation to Resolve Intramolecular RNA Structures in situ
GSE69651	Genome-wide DNase-seq profiling of Saccharomyces cerevisiae (W303 strain)
GSE69676	RNA polymerase II is trapped in initiation states on non-coding RNA transcripts
GSE69682	Transcriptome Engineering Promotes a Fermentative Transcriptional State
GSE69695	Psh1-mediated Proteolysis Prevents the Budding Yeast Centromeric Histone Variant from Mislocalizing to Promoter Nucleosomes [ChIP-Seq]
GSE69696	Psh1-mediated Proteolysis Prevents the Budding Yeast Centromeric Histone Variant from Mislocalizing to Promoter Nucleosomes
GSE70029	ChIP-Seq experiment to analyse Zip1 localisation in the Ctf19c mutants during meiotic prophase.
GSE70030	Rec8 ChIP-Seq experiment to analyse cohesin localisation in the Ctf19c mutants during meiotic prophase.
GSE70032	ChIP-Seq experiments to analyse Rec8 and Zip1 localisation in Ctf19c mutants during meiotic prophase
GSE70036	Adaptive aneuploidy protects against thiol peroxidase deficiency by increasing respiration via key mitochondrial proteins
GSE70191	Loss of the yeast SR protein Npl3 alters gene expression due to transcription readthrough
GSE70209	Variable glutamine-rich repeats modulate the function of the transcriptional regulator SSN6
GSE70232	Genome-wide chromatin localization maps of the endogenously expressed AID-labelled kinase/ATPase Rio1 in Saccharomyces cerevisiae W303, as determined under unperturbed culture conditions (YPD medium, exponential growth, 23°C)
GSE70287	The kinase/ATPase Rio1 coordinates yeast metabolism, physiology, growth and cell division at multiple levels
GSE70316	localization of Scc2 between wild type and scc4-m35 cells in S-phase
GSE70407	A new MCM modification cycle regulates DNA replication initiation
GSE70485	m1A marks translation initiation sites in human and mouse messenger RNA [Sequencing]
GSE70907	Targeted paired-end sequencing of nascent RNA from S. cerevisiae
GSE70908	Splicing of nascent RNA coincides with intron exit from RNA polymerase II
GSE70911	RNA-seq in bas1 and ino4 mutants
GSE71624	Genomewide Analysis of Clp1 Function in Transcription in Budding Yeast
GSE71711	Protein chaperones elicit a caloric restriction-like response to extend replicative lifespan
GSE71768	Association of Taf14 with acetylated histone H3 directs the DNA damage response and gene transcription
GSE71813	Barcode Sequencing Screen Identifies SUB1 as a Novel Regulator of Yeast Mating Pathway Genes
GSE71973	Pif1-family helicases cooperate to suppress widespread replication fork arrest at tRNA genes
GSE72092	Transcriptional analysis of wild-type budding yeast microcolonies encapsulated in alginate particles
GSE72106	Genomic nucleosome organization reconstituted with pure proteins
GSE72692	Chromatin dynamics and the RNA exosome function in concert to regulate transcriptional homeostasis (ChIP-seq)
GSE72845	Chromatin dynamics and the RNA exosome function in concert to regulate transcriptional homeostasis
GSE73145	Chromatin dynamics and the RNA exosome function in concert to regulate transcriptional homeostasis
GSE73227	The binding specificity and regulatory effect of WT and redesigned Puf2p [RNA-Seq]
GSE73273	The binding specificity and regulatory effect of WT and redesigned Puf2p [CLIP-Seq]
GSE73274	The binding specificity and regulatory effect of WT and redesigned Puf2p
GSE73364	Temporal regulation of dUTP biosynthesis limits uracil incorporation during early DNA replication
GSE73406	Transcriptional regulation by Set1 H3K4 methyltransferase and Jhd2 H3K4 demethylase
GSE73407	Set1 H3K4 methyltransferase and Jhd2 H3K4 demethylase
GSE73428	Contrasting roles of the RSC and ISW1/CHD1 chromatin remodelers in RNA polymerase II elongation and termination
GSE73819	Comparison of alternative decapping enzymes to map transcription start sites genome-wide
GSE73890	The conformation of yeast chromosome III is mating type-dependent and controlled by the recombination enhancer
GSE74028	Survey of cryptic unstable transcripts in yeast
GSE74090	Dynamics of chromatin maturation after genome replication
GSE74700	ChIP-Seq for Yrr1 protein on Saccharomyces cerevisiae cells carrying different YRR1 alleles in response to 4-nitroquinoline-N-oxide (4NQO)
GSE74787	Genome-wide cooperation by HAT Gcn5, remodeler SWI/SNF, and chaperone Ydj1 in promoter nucleosome eviction and transcriptional activation
GSE75322	Accurate prediction of cellular co-translational folding indicates proteins can switch from post- to co-translational folding
GSE75585	RNA-sequencing of wild-type (HHY168 background), REB1-FRB, and BDP1-FRB Saccharomyces cerevisiae strains
GSE75586	3´-end sequencing of poly(A)+ RNA in wild-type Saccharomyces cerevisiae and nuclear exosome mutant strains
GSE75587	Nuclear exosome
GSE75673	Natural diversity in pentose fermentation is explained by variations in histone deacetylases
GSE75897	Improved ribosome-footprint and mRNA measurements provide insights into dynamics and regulation of yeast translation
GSE75991	The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans
GSE76058	m1A marks translation initiation sites in human and mouse messenger RNA
GSE76077	Rapid evolutionary adaptation to growth on an ‘unfamiliar’ carbon source
GSE76117	Redefining the translational status of 80S monosomes
GSE76142	Divergence of Transcription Regulation and the Function of a Conserved Elongation Factor in Budding and Fission Yeast
GSE76444	RNA-seq to identify P-body associated mRNAs upon glucose starvation, Na+ and Ca2+ stresses
GSE76461	The role of Sgf73 occupancy
GSE77257	RNA-Seq analysis of INO80 complex deletion mutants
GSE77631	Nucleosome Positioning Dynamics Through the Yeast Metabolic Cycle
GSE77863	Global analysis of transcriptionally engaged yeast RNA polymerase III reveals extended tRNA transcripts
GSE77945	Role of Yng2 PHD and CHD-containing Eaf3 subunits of NuA4 on genome wide histone H4K8 acetylation, NuA4 localization and Pol II distribution
GSE78204	Transcriptome sequencing of three yeast strains
GSE80575	Histone H3K4 methylation regulates deactivation of the Spindle Assembly Checkpoint through direct binding of Mad2
GSE81269	Ribosome profiling study of Dhh1p overexpression and the dhh1 knockout strain using monosome-protected footprints
GSE81542	Nuclear mRNA quality control is bypassed for rapid export of stress responsive transcripts [RNA-Seq]
GSE83123	MNase-sensitive complexes in yeast: nucleosomes and non-histone barriers
GSE83416	Comparative dynamic transcriptome analysis (cDTA-seq) and total RNA-seq of ATP-analog sensitive Kin28 budding yeast
GSE83417	Pol II and CTD Phosphorylation of ATP-analog sensitive Kin28 budding yeast
GSE83617	Global analyses of RNA G-quadruplexes
GSE83648	A role of RPA in replication coupled nucleosome assembly
GSE83821	High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast.
GSE85109	Transcriptome profile of yeast adapted to the toxic effect of manganese
GSE85198	CAN1 Arginine Permease Deficiency Extends Yeast Replicative Lifespan via Translational Activation of Stress Response Genes
GSE85253	Meiotic double-strand break end resection mapping by S1Seq
GSE85501	Loss of the SUMO Protease Ulp2 Triggers a Specific Multi-Chromosome Aneuploidy
GSE85564	Role of 14-3-3 in the transcriptional response of Saccharomyces cerevisiae to potassium starvation.
GSE85619	Inhibition of eukaryotic translation by the antitumor natural product Agelastatin A
GSE85843	Dissecting Gene Expression Changes Accompanying a Euploid-Aneuploid Phenotypic Switch
GSE85944	Translation of poly(A) tails leads to precise mRNA cleavage and widespread ribosome rescue
GSE86149	S. cerevisiae RNA-seq in wild-type and sir2Δhst1Δ strains
GSE86242	Gene expression changes in yeast cells deleted for Nat4 and cells grown in calorie-restriction
GSE86466	Proteomic and genomic characterization of a yeast model for Ogden syndrome [RNA-seq and Ribo-seq]
GSE86482	Proteomic and genomic characterization of a yeast model for Ogden syndrome
GSE86483	Nuclear RNA decay pathways aid rapid remodeling of gene expression in yeast
GSE87238	In vivo RNA binding sites of the yeast ribosome biogenesis factor Utp23
GSE87311	Cohesin-dependent compaction of mitotic chromosomes in budding yeast
GSE87356	Regulator of Ty1 transposition protein 105 (Rtt105) is an RPA chaperone and is required for genome stability maintenance
GSE87547	Randomized CRISPR-Cas Transcriptional Perturbation Screening Reveals Protective Genes against Alpha-Synuclein Toxicity
GSE87614	Translation initiation factor eIF4G1 preferentially binds yeast transcript leaders containing conserved oligo-uridine motifs
GSE87888	A novel translational control mechanism involving RNA structures within coding sequences
GSE87919	RNA binding by the histone methyltransferases Set1 and Set2
GSE88875	Yeast Hsp90-dependent chromatin changes as monitored using DNase-Seq
GSE88876	Sba1 ChIP-Seq
GSE88877	chromatin changes upon short Hsp90 depletion and Sba1 ChIP-Seq
GSE88878	RNA transcription profile of different yeast mutants under glucose starvation (0.05% glucose)
GSE89530	RNA-SEQ analysis of bdf1-Y187F-Y354F mutant strain during yeast sporulation
GSE89601	Bidirectional terminators in Saccharomyces cerevisiae prevent cryptic transcription from invading neighbouring genes
GSE89721	Rad53 checkpoint kinase couples leading and lagging strand DNA synthesis
GSE90008	High throughput sequencing in synchronized yeast meiotic culture with pCUP1-IME1 pCUP1-IME4 strain
GSE90009	Synchronized yeast meiotic culture timecourse
GSE90647	Transcriptome-wide analysis of alternative routes for RNA substrates into the exosome complex
GSE90902	Cohesins and condensins orchestrate the 4D dynamics of yeast chromosomes during the cell cycle
GSE91068	RNAseq and ribosome profiling of yeast cells grown under methionine restriction condition.
GSE92300	Systematic investigation of transcription factor activity in the context of chromatin using massively parallel DNA binding and expression assays
GSE92306	Large-scale mapping of gene regulatory logic reveals 5 context-dependent repression by transcriptional 65 activators
GSE92907	Transcriptomic analysis of strains evolved for anaerobic xylose utilization [Y223_Y127_Y128]
GSE92908	Transcriptomic analysis of strains evolved for anaerobic xylose utilization
GSE93059	Recruitment of the histone acetyltransferase Nu3A is independently promoted by histone H3K4 and H3K36 methylation in S. cerevisiae
GSE93307	Splicing defects in RNA export receptor mutants
GSE93641	Histone H3Lys4 trimethylation in budding yeast S. cerevisiae for wild type and cnc1Djhd2D yeast mutants
GSE93662	Genome-wide determinants of sequence-specific DNA binding
GSE93830	Profiling Ssb-Nascent Chain Interactions Reveals Principles of Hsp70-Assisted Folding
GSE94313	Subtracting the sequence bias from partially digested MNase-seq data reveals a general contribution of TFIIS to nucleosome dynamics
GSE94404	NGS analysis of WT and snf2∆ transcriptomes
GSE94495	Interaction dynamics determine signaling and output pathway responses
GSE94795	Conserved forkhead dimerization motif controls DNA replication timing and spatial organization of chromosomes in S. cerevisiae (HTS)
GSE94796	Conserved forkhead dimerization motif controls DNA replication timing and spatial organization of chromosomes in S. cerevisiae
GSE94889	RNA substrate length as an indicator of exosome interactions in vivo
GSE94941	RNA polymerase II stalling at pre-mRNA splice sites is enforced by ubiquitination of the catalytic subunit [CRAC]
GSE94942	RNA polymerase II stalling at pre-mRNA splice sites is enforced by ubiquitination of the catalytic subunit [RNA-Seq]
GSE94944	RNA polymerase II stalling at pre-mRNA splice sites is enforced by ubiquitination of the catalytic subunit
GSE95069	Differential expression analysis of haploid, diploid, and tetraploid yeast experimentally evolved in raffinose medium
GSE95076	The transcriptome comparison data between Saccharomyces cerevisiae cells in xylose consumption phase after glucose depleted in glucose-xylose co-fermentation and when xylose was the sole carbon source.
GSE95356	Determinants of H3K4me pattern establishment
GSE96727	mitoCPR - a surveillance pathway that protects mitochondria in response to mitochondrial import stress [yeast]
GSE96728	mitoCPR - a surveillance pathway that protects mitochondria in response to mitochondrial import stress
GSE97345	Yeast RNA-binding protein Nab3 regulations genes involved in nitrogen metabolism
GSE97416	The histone variant H2A.Z promotes efficient co-transcriptional splicing in S. cerevisiae
GSE97797	Evolution of Reduced Co-Activator Dependence Led to Target Expansion of a Starvation Response Pathway [Scer ChIP-seq]
GSE97799	Evolution of Reduced Co-Activator Dependence Led to Target Expansion of a Starvation Response Pathway [Scer RNA-seq]
GSE97801	Evolution of Reduced Co-Activator Dependence Led to Target Expansion of a Starvation Response Pathway
GSE97822	H2A.Z acetylation fine-tunes gene expression dynamics by regulating H2A.Z degradation
GSE97827	RNA pol II Dynamics Modulate Co-transcriptional Chromatin Modification, CTD phosphorylation and transcriptional direction
GSE98079	Transcriptional Profiling of Biofilm Regulators Identified by an Overexpression Screen in S. cerevisiae
GSE98304	Transfer RNA Genes Affect Chromosome Architecture and Function
GSE98333	Analysis of Ribosome Protected Fragments of mRNAs from yeast strains either expressing Rio1p or depleted of Rio1p
GSE98573	Widespread and precise epigenomic reprogramming in response to heat shock
GSE99487	A Structural Motif for mRNA Target Recognition by a tRNA Pseudouridine Synthase
GSE99990	Experimental assay of a fitness landscape on a macroevolutionary scale
GSE100564	Whole genome ChIP-seq of histone H3 threonine 11 phosphorylation in Saccharomyces cerevisiae
GSE100643	Centromeres license the mitotic condensation of yeast chromosome arms
GSE101290	INO80 Chromatin Remodelling Coordinates Metabolic Homeostasis with Cell Division
GSE101368	Antisense transcriptional interference mediates tight gene repression in budding yeast
GSE103004	Industrial antifoam agents impair ethanol fermentation and induce stress responses in yeast cells
GSE103073	Dbf4 recruitment by forkhead transcription factors defines an upstream rate-limiting step in determining replication origin firing
GSE103468	Genetic dissection of chromatin regulators reveals the INO80 chromatin remodeling complex as a key metabolic regulator utilizing TORC1 and histone acetylation pathways
GSE103943	Localization of Cdc7 Protein Kinase During DNA Replication in Saccharomyces cerevisiae
GSE104009	Sgo1 ChIP-seq for wild type cells arrested in metaphase with and without tension
GSE104081	ChIP-Seq for wild type strains arrested in metaphase with and without tension
GSE104082	Scc1 ChIP-Seq in a strain where the centromere on chromosome III has been moved to an ectopic site
GSE104135	Convergent genes shape budding yeast pericentromeres
GSE104281	Genome wide mapping of Npa1-HTP binding sites in yeast by CRAC
GSE104312	RNA transcription profile of different yeast mutants under glucose starvation (0.05% glucose) and comparison of transcriptome of WT and H3D_H3H
GSE104313	Independent manipulation of histone H3 modifications in individual nucleosomes reveals the contributions of sister histones to transcription
GSE104506	Ssd1 and Gcn2 suppress global translational efficiency in replicatively aged yeast, while their activation in young cells extends lifespan
GSE107784	mitoCPR - a surveillance pathway that protects mitochondria in response to mitochondrial import stress
GSE108193	RNA-seq WT and nhp6ab
GSE108217	Genome wide analysis of H4K16Ac distribution in WT and nhp6ab cells
GSE108219	WT and nhp6ab
GSE108261	The spatial position of budding yeast chromosomes affects gene expression
GSE108482	Casein Kinase 2 Mediated Phosphorylation of Spt6 Modulates Histone dynamics and Regulates Spurious Transcription (RNA-Seq)
GSE108942	Tma64 (eIF2D), Tma20 (MCT-1), and Tma22 (DENR) recycle post-termination 40S subunits in vivo
GSE109036	A selection of Saccharomyces cerevisiae promoters for biotechnological applications aiming at the use of synthetic glycerol medium
GSE109078	Casein Kinase 2 Mediated Phosphorylation of Spt6 Modulates Histone dynamics and Regulates Spurious Transcription (ChIP-Seq)
GSE109080	Casein Kinase 2 Mediated Phosphorylation of Spt6 Modulates Histone dynamics and Regulates Spurious Transcription
GSE109144	Genome-wide maps of H2Bub and H2B states
GSE109343	Lso2 is a conserved ribosome-bound protein required for translational recovery in yeast
GSE109925	Conserved Methyltransferase Spb1 Targets mRNAs for Regulated Modification with 2′-O-Methyl Ribose [meTH-Seq]
GSE109926	Conserved Methyltransferase Spb1 Targets mRNAs for Regulated Modification with 2′-O-Methyl Ribose [eCLIP]
GSE109927	Conserved Methyltransferase Spb1 Targets mRNAs for Regulated Modification with 2′-O-Methyl Ribose
GSE110326	TORC1 is required for the entry of yeast gametes into the mitotic cell cycle
GSE110818	RNA-seq of strains grown under the control of native galactose regulon or synthetic xylose regulon vs constitutive expression of galactose and xylose metabolic genes
GSE111508	Multi-environment fitness landscapes of a tRNA gene
GSE112522	Asymmetric partition of parental histone (H3-H4)2 tetramers onto replicating DNA strands
GSE112685	Chromatin Remodeler RSC2 Modulates Binding of the Transcriptional Activator Ace1p and Improves the Transcription of CUP1 by Fast Cycles of Remodeling
GSE112891	The ER membrane protein complex interacts cotranslationally to enable biogenesis of multipass membrane proteins
GSE114290	Genomic DNA sequencing of budding yeast strains
GSE114560	Determination of global decay rates of yeast transcriptome and identification of factors impact mRNA stability
GSE114899	Study of ribosome dynamics of rpl3[W255C] and its interactions with ribosome-associated chaperones
GSE115775	Spt6 is required for the fidelity of promoter selectivity
GSE116523	A Chemical Kinetic Basis for Measuring Translation Initiation and Elongation Rates from Ribosome Profiling data
GSE117514	Contrasting roles of the RSC and ISW1/CHD1 chromatin remodelers in RNA polymerase II elongation and termination
GSE118580	The Mcm2-Ctf4-Pola axis facilitates parental histone transfer to lagging strands
GSE118676	Stoichiometric Production of Protein-Complex Components in Eukaryotes Without Widespread Feedback Regulation
GSE118889	Elucidating the regulation of the Yeast Metabolic Cycle through the integration of gene expression and chromatin status
GSE119114	Chromatin-dependent cryptic promoters encode alternative protein isoforms in yeast
GSE119134	Detection of cryptic unstable transcripts associated with ribosomes in yeast
GSE119160	Sacharomyces cerevisiae Transcript Isoform mapping (set2)
GSE119237	SFP1 (RNA-seq)
GSE119238	The roles of duplication and divergence in the evolution of a transcription factor
GSE119333	The transcriptome comparison data between Saccharomyces cerevisiae cells in thi2p deletion strains and the control strains BSGX001 in xylose consumption phase after glucose depleted in glucose-xylose co-fermentation.
GSE119867	Defining the RNA Interactome by Total RNA-Associated Protein Purification
GSE120019	Histone crotonylation links metabolism with gene expression
GSE121765	Excised linear introns regulate growth in yeast
GSE121927	Detection of internal N7-methylguanosine (m7G) RNA modifications by mutational profiling sequencing
GSE122039	Translatome and transcriptome analysis of TMA20 (MCT-1) and TMA64 (eIF2D) knockout yeast strains
GSE122423	The DNA polymerase subunit Pol32 and RNase H1 are required for stress granule formation through R-loop regulation
GSE122987	Transcriptome analysis of PPN1 knock-out and overproducing yeast strains grown in control and manganese excess media
GSE123166	Selective ribosome profiling to study interactions of translating ribosomes in yeast
GSE126236	Mip6 binds directly to the Mex67 UBA domain to maintain low levels of Msn2/4 stress dependent mRNAs
GSE126686	Distinct transcriptional roles for Histone H3-K56 acetylation during the cell cycle
GSE127179	The mRNA degradation factor Xrn1 regulates transcription elongation in parallel to Ccr4
GSE129699	Genomic profiling of yeast resistance to food carcinogens
GSE131388	Genome-wide maps of Bud27 binding to the chromatin [ChIP-seq]
GSE131389	Global analyisis to study the bud27∆ and WT treated with rapamycin regarding to WT [RNA-seq]
GSE131390	Prefoldin-like Bud27 influences the transcription of ribosomal components and ribosome biogenesis in Saccharomyces cerevisiae
GSE131797	The impact of Prp18p on splicing fidelity and efficiency in budding yeast
GSE132973	Pol5 is required for recycling of small subunit biogenesis factors and for formation of the polypeptide exit tunnel of the large ribosomal subunit
GSE133370	Pairs of amino acids at the P- and A-sites of the ribosome predictably and causally modulate translation-elongation rates
GSE134152	RNAseq and ribosome profiling of yeast cells grown under glucose restriction condition.
GSE134534	Genome-wide binding of Rpb1 (the largest subunit of the RNA polymerase II) to the chromatin state in bud27∆ and wild-type mutant strains (ChIP-seq)
GSE134987	tRNA pool analysis of S. cerevisiae lacking Paf1 and Rtf1 using tRNA-HySeq
GSE135526	Substrate Specificity of the TRAMP Nuclear Surveillance Complexes
GSE135568	A multi-omics dataset of heat-shock response in the yeast RNA transport protein Mip6
GSE136056	Nascent Transcript Folding Plays a Major Role in Determining RNA Polymerase Elongation Rates
GSE137021	Temperature-dependent regulation of upstream open reading frame translation in s. cerevisiae
GSE137613	Translation switch from initiation to elongation needs Not4 and Not5 collaboration
GSE138281	The Set1 N-terminal domain and Swd2 interact with the RNA polymerase II CTD to recruit COMPASS
GSE139266	RNA sequencing (RNA-Seq) in Saccharomyces cerevisiae
GSE139268	DNaseI hypersensitivity mapping/DNaseI high-throughput sequencing (DHS-Seq) in Saccharomyces cerevisiae
GSE140255	Analysis of lacking Nα-terminal acetylation of proteins by NatA and NatB in Saccharomyces cerevisiae on mRNA levels and protein synthesis
GSE140733	Aneuploidy-induced proteotoxic stress can be effectively tolerated without dosage compensation, genetic mutations or stress responses
GSE141887	Misactivation of multiple starvation responses in yeast by loss of tRNA modifications
GSE142996	DNA polymerase α interacts with H3-H4 and facilitates the transfer to parental histones to lagging strand
GSE143305	Histone Exchange is Associated with Activator Function at Transcribed Promoters and with Repression at Histone Loci
GSE144072	INO80C chromatin remodeler prevents promiscuous transcription at replication origins
GSE144741	A common molecular mechanism underlies the role of Mps1 in chromosome biorientation and the spindle assembly checkpoint
GSE146296	Chromatin recruitment of Rad6 determines H3K4me3 in Saccharomyces cerevisiae
GSE146791	The environmental stress response causes ribosome loss in aneuploid yeast cells.
GSE147763	Next Generation Sequencing Analysis of Wild Type and SESAME Transcriptomes I
GSE147764	Next Generation Sequencing Analysis of Wild Type and SESAME Transcriptomes II
GSE147765	Genome-wide profiling of SESAME complex and related regulators
GSE150827	The ISW1a ATP-dependent chromatin remodeler acts specifically on dinucleosomes to regulate early transcription [MNase-Seq]
GSE150829	The ISW1a ATP-dependent chromatin remodeler acts specifically on dinucleosomes to regulate early transcription
GSE151664	Ribosome-bound Get4/5 facilitate the capture of tail anchored proteins by Sgt2 in yeast
GSE151729	RNA-sequencing study of global gene expression in haploid yeast Saccharomyces cerevisiae mating type MATa treated with different doses of alpha-pheromone
GSE152094	Rpb4 and Puf3 imprint and post-transcriptionally control stability of a common set of mRNAs in yeast
GSE152095	Rpb4 and Puf3
GSE153609	Time series data of chromatin occupancy and transcription under cadmium stress
GSE153842	RNA-seq for two forms of Gcr1, during exponential phase and diauxic shift
GSE153843	ChIP-seq and RNA-seq for two forms of Gcr1, during exponential phase and diauxic shift
GSE158548	Polyadenylation site mapping of xrn1∆ in Sacchromyces cerevisiae
GSE160262	The Asymmetric Distribution of RNAPII and Nucleosomes on Replicated Daughter Genomes is caused by Differences in Replication Timing between the Lagging and the Leading Strand [ChIP-seq]
GSE160265	The Asymmetric Distribution of RNAPII and Nucleosomes on Replicated Daughter Genomes is caused by Differences in Replication Timing between the Lagging and the Leading Strand [RNA-seq]
GSE160509	The Asymmetric Distribution of RNAPII and Nucleosomes on Replicated Daughter Genomes is caused by Differences in Replication Timing between the Lagging and the Leading Strand
GSE160734	The RNA helicase Dbp7 promotes domain V/VI compaction and stabilization of inter-domain interactions during early 60S assembly
GSE160821	Essential histone chaperones collaborate to regulate transcription and chromatin integrity
GSE162126	Transcriptomic analysis of evolved strains.
GSE163866	The evolution, evolvability, and engineering of gene regulatory DNA [RNA-seq]
GSE164275	Context-specific action of macrolide antibiotics on the eukaryotic ribosome
GSE165866	Rerep-Seq of copper resistant yeast
GSE168955	Transcriptome profile of tra1 mutant in S. cerevisiae
GSE172093	A mechanism of coupling leading and lagging strand DNA synthesis under replication stress in budding yeast
GSE173680	Transcriptome analysis of the ΔYGP1 strain compared to its parental strain
GSE173856	RiboDoc: a Docker-based package for ribosome profiling analysis
GSE173861	Intergenic ORFs as elementary structural modules of de novo gene birth and protein evolution
GSE174145	Transcriptome profile of S. cerevisiae strains expressing mistranslating tRNAs
GSE174688	VID22 counteracts G-quadruplex-induced genome instability
GSE178694	Yeast AlaRS mutants
GSE179677	Small RNA sequencing of the 8 to 30-nucleotide window from various samples
GSE184042	Global mapping of the energetic and allosteric landscapes of protein binding domains
GSE189089	RNA-sequencing results of five samples across three YMC cycles of both wt and yaf9W89A strains
GSE189306	Deficiency of the RNA-binding protein Cth2 extends yeast replicative lifespan by alleviating its repressive effects on mitochondrial function
GSE201385	Gene expression profile of yeast cells under stress [bulk RNA-seq]
GSE201386	Gene expression profile at single cell level yeast cells under stress
GSE201387	Gene expression profile of yeast cells under stress
GSE206033	Transcriptome profile of tra1 mutant in S. cerevisiae
GSE207652	CRAC of yeast RNA polymerase II in WT and isw1Δ cells in standard conditions or upon ER stress.
GSE212387	Transcriptome profiling time course of ZPR1-depleted S.cerevisiae cells
GSE216310	High-Throughput Screening of the Saccharomyces cerevisiae Genome for 2-Amino-3-Methylimidazo [4,5-f] Quinoline Resistance Identifies Colon Cancer-Associated Genes
GSE221033	Fun30-Myc ChIP-seq in Spo11 wild type and spo11-yf mutants
GSE221377	Chromatin remodeler Fun30 promotes efficient DSB end resection and recombination during yeast meiosis
GSE221908	The environmental stress response regulates ribosome content in cell cycle-arrested S. cerevisiae
GSE230732	Distinct roles for TUP1 and CYC8 in the regulation of gene transcription in yeast
GSE235559	Loop-extruding Smc5/6 organizes transcription-induced positive DNA supercoils [RNA-seq]
GSE235560	Loop-extruding Smc5/6 organizes transcription-induced positive DNA supercoils.
GSE245521	Genome-wide Regulation of Pol II, FACT, and Spt6 Occupancies by RSC in Saccharomyces cerevisiae
GSE248405	RNA pol II assembly affects ncRNA expression