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Series GSE10966 Query DataSets for GSE10966
Status Public on Apr 21, 2008
Title Highly integrated epigenome maps in Arabidopsis - whole genome shotgun bisulfite sequencing
Organism Arabidopsis thaliana
Experiment type Methylation profiling by high throughput sequencing
Summary Part of a set of highly integrated epigenome maps for Arabidopsis thaliana.
Keywords: Illumina high-throughput bisulfite sequencing
Overall design Whole genome shotgun bisulfite sequencing of wildtype Arabidopsis plants (Columbia-0), and met1, drm1 drm2 cmt3, and ros1 dml2 dml3 null mutants using the Illumina Genetic Analyzer.
Contributor(s) Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, Ecker JR
Citation(s) 18423832
Submission date Mar 27, 2008
Last update date May 15, 2019
Contact name Joseph R Ecker
Phone 8584534100
Organization name HHMI-Salk-Institute
Department Genomic Analysis Laboratory
Lab Ecker lab
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
Platforms (1)
GPL9062 Illumina Genome Analyzer (Arabidopsis thaliana)
Samples (4)
GSM276809 Col-0_methylC-seq
GSM276810 met1_methylC-seq
GSM276811 ddc_methylC-seq
This SubSeries is part of SuperSeries:
GSE10877 Highly integrated single base resolution maps of the epigenome in Arabidopsis
SRA SRP000539
BioProject PRJNA108793

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE10966_RAW.tar 1.6 Gb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data not provided for this record
Raw data are available in SRA

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