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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Aug 20, 2009 |
| Title |
Illumina Genome Analyzer (Arabidopsis thaliana) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Arabidopsis thaliana |
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| Submission date |
Aug 20, 2009 |
| Last update date |
Aug 10, 2016 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (435)
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GSM253622, GSM253623, GSM253624, GSM253625, GSM276809, GSM276810
GSM276811, GSM276812, GSM277608, GSM277609, GSM277610, GSM277611, GSM277612, GSM277613, GSM277614, GSM277615, GSM280226, GSM280227, GSM280228, GSM280229, GSM280230, GSM280231, GSM280232, GSM284747, GSM284748, GSM284749, GSM284750, GSM284751, GSM284752, GSM296187, GSM296188, GSM296189, GSM296190, GSM296191, GSM296192, GSM342999, GSM343000, GSM343001, GSM343002, GSM343004, GSM343005, GSM364939, GSM364940, GSM364941, GSM364942, GSM364943, GSM365164, GSM365165, GSM365166, GSM365167, GSM365168, GSM365169, GSM365170, GSM366865, GSM366866, GSM366867, GSM366868, GSM366869, GSM366870, GSM385393, GSM385394, GSM385395, GSM385396, GSM402423, GSM402424, GSM424618, GSM424742, GSM424743, GSM424744, GSM424745, GSM424847, GSM424848, GSM442932, GSM442933, GSM442934, GSM442935, GSM491567, GSM491568, GSM491569, GSM491570, GSM491571, GSM491572, GSM491573, GSM491574, GSM491575, GSM491576, GSM491577, GSM491578, GSM491579, GSM506208, GSM506209, GSM506210, GSM506211, GSM512702, GSM512703, GSM518432, GSM530098, GSM543295, GSM543297, GSM554339, GSM554340, GSM554341, GSM554342, GSM591260, GSM613465, GSM613466, GSM614638, GSM614639, GSM614640, GSM614641, GSM632205, GSM632206, GSM632207, GSM632208, GSM632209, GSM642335, GSM642336, GSM642337, GSM642338, GSM647184, GSM647185, GSM647186, GSM647187, GSM678873, GSM678874, GSM678875, GSM678876, GSM678877, GSM678878, GSM678879, GSM678880, GSM678881, GSM678882, GSM678883, GSM678884, GSM678885, GSM678886, GSM678887, GSM678888, GSM678889, GSM678890, GSM678891, GSM678892, GSM709567, GSM736442, GSM759580, GSM759581, GSM759582, GSM761689, GSM761690, GSM773786, GSM773787, GSM773788, GSM773789, GSM773790, GSM773791, GSM773792, GSM773793, GSM773794, GSM773795, GSM773796, GSM773797, GSM773798, GSM773799, GSM799866, GSM799867, GSM799868, GSM799869, GSM820411, GSM820412, GSM820413, GSM820414, GSM820415, GSM820416, GSM832032, GSM832033, GSM832046, GSM843784, GSM843785, GSM843786, GSM843787, GSM849859, GSM849865, GSM850278, GSM850279, GSM850477, GSM850478, GSM852808, GSM852809, GSM852810, GSM852811, GSM852812, GSM852813, GSM852814, GSM852815, GSM852816, GSM852817, GSM852818, GSM852819, GSM852820, GSM852821, GSM852822, GSM852823, GSM852824, GSM852825, GSM852826, GSM852827, GSM852828, GSM852829, GSM852830, GSM852831, GSM852832, GSM852833, GSM852834, GSM852835, GSM852836, GSM852837, GSM852838, GSM852839, GSM852840, GSM852841, GSM852842, GSM852843, GSM852844, GSM852845, GSM852846, GSM852847, GSM866233, GSM866234, GSM889255, GSM889277, GSM889278, GSM889280, GSM889281, GSM895899, GSM895900, GSM895901, GSM1053071, GSM1053072, GSM1077432, GSM1077433, GSM1077434, GSM1077435, GSM1077436, GSM1077437, GSM1077438, GSM1077439, GSM1185101, GSM1185102, GSM1185103, GSM1185104, GSM1248693, GSM1248694, GSM1248695, GSM1248696, GSM1248697, GSM1248698, GSM1248699, GSM1248700, GSM1248701, GSM1248702, GSM1248703, GSM1248704, GSM1263780, GSM1263781, GSM1263782, GSM1263783, GSM1263784, GSM1281703, GSM1281704, GSM1281705, GSM1281706, GSM1282365, GSM1282366, GSM1297511, GSM1348068, GSM1348069, GSM1348070, GSM1348071, GSM1348072, GSM1348073, GSM1399652, GSM1399653, GSM1489632, GSM1489633, GSM1489634, GSM1489635, GSM1489636, GSM1489637, GSM1489638, GSM1489639, GSM1489640, GSM1489641, GSM1489642, GSM1489643, GSM1495677, GSM1495678, GSM1495679, GSM1495680, GSM1527628, GSM1527629, GSM1527630, GSM1527631, GSM1527632, GSM1527633, GSM1527634, GSM1527635, GSM1527636, GSM1527637, GSM1527638, GSM1527639, GSM1530033, GSM1530034, GSM1530035, GSM1530036, GSM1530037, GSM1530038, GSM1530039, GSM1530040, GSM1530041, GSM1530042, GSM1530043, GSM1530044, GSM1530045, GSM1530046, GSM1530047, GSM1530048, GSM1530049, GSM1530050, GSM1912474, GSM1912475, GSM1912476, GSM1912477, GSM2031992, GSM2031993, GSM2031997, GSM2046083, GSM2046084, GSM2067565, GSM2067566, GSM2067567, GSM2067568, GSM2067569, GSM2067570, GSM2067571, GSM2067572, GSM2094922, GSM2094923, GSM2094924, GSM2094925, GSM2094926, GSM2094927, GSM2094928, GSM2094929, GSM2094930, GSM2094931, GSM2094932, GSM2094933, GSM2094934, GSM2094935, GSM2094936, GSM2094937, GSM2094938, GSM2094939, GSM2094940, GSM2094941, GSM2094942, GSM2094943, GSM2094944, GSM2094945, GSM2094946, GSM2094947, GSM2094948, GSM2094949, GSM2094950, GSM2094951, GSM2094952, GSM2094953, GSM2249228, GSM2249229, GSM2343006, GSM2343007, GSM2343008, GSM2343009, GSM2343010, GSM2492032, GSM2492033, GSM2492034, GSM2492035, GSM2492036, GSM2492037, GSM2835793, GSM2835794, GSM2835795, GSM2835796, GSM2835797, GSM2835798, GSM2840115, GSM2840116, GSM2840117, GSM2840118, GSM2840119, GSM2840120, GSM3290936, GSM3290937, GSM3290938, GSM3290939, GSM3290940, GSM3290941, GSM3290942, GSM3290943, GSM3716740, GSM3716741, GSM3716742, GSM3716743, GSM3716744, GSM3716745, GSM3716746, GSM3716747, GSM3716748, GSM3716749, GSM3716750, GSM3716751, GSM3716752, GSM3716753, GSM3716754, GSM3716755, GSM3716756, GSM3716757, GSM4761634, GSM4761635, GSM4761636, GSM4761637, GSM4761638, GSM4761639
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| Series (93)
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| GSE10036 |
Small RNAs in four Argonaute complexes in Arabidopsis |
| GSE10877 |
Highly integrated single base resolution maps of the epigenome in Arabidopsis |
| GSE10966 |
Highly integrated epigenome maps in Arabidopsis - whole genome shotgun bisulfite sequencing |
| GSE10967 |
Highly integrated epigenome maps in Arabidopsis - small RNA sequencing |
| GSE10968 |
Highly integrated epigenome maps in Arabidopsis - transcriptome sequencing |
| GSE11070 |
A link between RNA metabolism and silencing affecting Arabidopsis development |
| GSE11094 |
Novel microRNA-target RNA pairs revealed by Parallel analysis of RNA ends |
| GSE11657 |
The association between gene expression and whole genome histone H3K4 mono-, di, and trimethylation: ChIP-seq data |
| GSE11658 |
The association between gene expression and whole genome histone H3K4 mono-, di, and trimethylation |
| GSE13605 |
AGO1-dependent Small RNA in Arabidopsis Identified by High-Throughput Sequencing |
| GSE14570 |
Extensive demethylation of repetitive elements during seed development underlies gene imprinting |
| GSE14600 |
Target genes of the MADS transcription factor SEPALLATA3, ChIP-seq |
| GSE14636 |
Target genes of the MADS transcription factor SEPALLATA3 |
| GSE14694 |
Computational and Analytical Framework for Small RNA Profiling by High-Throughput Sequencing (reproducibility) |
| GSE14695 |
Computational and Analytical Framework for Small RNA Profiling by High-Throughput Sequencing (standards) |
| GSE14696 |
Computational and Analytical Framework for Small RNA Profiling by High-Throughput Sequencing |
| GSE15348 |
Small RNAs in Arabidopsis hybrid siliques |
| GSE16071 |
Loss of H3K27 monomethylation leads to DNA-methylation-independent release of gene silencing |
| GSE16940 |
An effective approach for identification of in vivo protein–DNA binding sites from paired-end ChIP-Seq data |
| GSE16959 |
smRNAs in wildtype and RDR6-15 knockout Arabidopsis thaliana Col-0 leaf |
| GSE16971 |
Low oxygen responsive small RNAs in Arabidopsis |
| GSE17741 |
Uncovering small RNA-mediated responses to phosphate-deficiency in Arabidopsis by deep sequencing |
| GSE19694 |
Genome-wide analysis of siRNA accumulation in Arabidopsis treated with bacteria |
| GSE20176 |
Orchestration of Floral Initiation by APETALA1 |
| GSE20448 |
Genome-wide maps of AGO1-bound small RNA in Arabidopsis leaves |
| GSE20660 |
MIRNA Gene Evolution in Arabidopsis lyrata and Arabidopsis thaliana: Illumina sequencing |
| GSE20662 |
MIRNA Gene Evolution in Arabidopsis lyrata and Arabidopsis thaliana |
| GSE21152 |
Conservation and divergence of methylation patterning in plants and animals |
| GSE21673 |
Relationship between nucleosome positioning and DNA methylation |
| GSE21821 |
Relationship between nucleosome positioning and DNA methylation: Bisulfite-Seq, ChIP-Seq, and Mnase-Seq |
| GSE22276 |
Genome-wide maps of histone modifications in Arabidopsis thaliana |
| GSE23771 |
CMV 2b immunoprecipitated small RNAs data set |
| GSE24970 |
Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and post-transcriptional regulations: RNA-Seq |
| GSE24974 |
Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and post-transcriptional regulations |
| GSE25022 |
sRNA populations of 2 week old seedlings from Arabidopsis ecotypes C24, Ler, and their two reciprocal F1 hybrids |
| GSE25738 |
Examination of smallRNA in wildtype and transgenic Arabidopsis grown under different temperature |
| GSE26161 |
Profiling of Argonaute (AGO) 2-associated sRNAs after infection of bacterial pathogen Pseudomonas syringae |
| GSE26356 |
Genome-wide profiling of small RNAs in Arabidopsis under abiotic stresses |
| GSE27477 |
Small RNAs from Arabidopsis plants infected with CMV-∆2b |
| GSE28627 |
Profiling of small RNAs in Arabidopsis ovules |
| GSE29687 |
Cis- and trans- regulatory divergence between progenitor species determines gene-expression novelty in Arabidopsis allopolyploids |
| GSE30616 |
[E-MTAB-587] PCR_artifacts |
| GSE30711 |
ChIP-Seq data from Arabidopsis thaliana under dark and far-red light |
| GSE30713 |
Genome-wide Binding Site Analysis of FAR-RED ELONGATED HYPOCOTYL 3 Reveals Its Novel Function in Arabidopsis Development |
| GSE31211 |
sRNA sequencing from wild-type Arabidopsis (diverse tissue types) |
| GSE32284 |
IBM1, a JmjC domain histone demethylase, is involved in the regulation of RNA-directed DNA methylation through epigenetic control of RDR2 and DCL3 expression in Arabidopsis. |
| GSE33120 |
Functional characterisation of SVP by a Chromatin Immunoprecipitation sequencing approach |
| GSE33642 |
Genome-wide profiling of small RNAs in Arabidopsis seedlings under salt and cold stresses |
| GSE34190 |
Characterization of the small RNA populations of developing Arabidopsis thaliana pollen. |
| GSE34476 |
Analysis of the Arabidopsis shoot meristem transcriptome during floral transition identifies distinct regulatory patterns and an LRR protein that promotes flowering |
| GSE34497 |
Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology |
| GSE34521 |
Two replicates of mRNA from Arabidopsis thaliana leaves 24 hours post infection with Botrytis cinerea |
| GSE34655 |
Genome-wide profiling of DNA methylation in two Arabidopsis ecotypes and their reciprocal hybrids - mRNA-seq |
| GSE34656 |
Genome-wide profiling of DNA methylation in two Arabidopsis ecotypes and their reciprocal hybrids - small RNA-seq |
| GSE34657 |
Genome-wide profiling of DNA methylation in two Arabidopsis ecotypes and their reciprocal hybrids - Bisulfite-seq |
| GSE34658 |
Genome-wide profiling of DNA methylation in two Arabidopsis ecotypes and their reciprocal hybrids |
| GSE35335 |
High-throughput SOLEXA sequencing of endogenous small RNAs from Arabidopsis thaliana wild-type |
| GSE36338 |
A Role for Small RNAs in DNA Double-Strand Break Repair |
| GSE36500 |
Cytoplasmic Assembly and Selective Nuclear Import of Arabidopsis ARGONAUTE4/siRNA Complexes |
| GSE39405 |
The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation independent manner |
| GSE39901 |
Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. |
| GSE42901 |
NOT2 proteins promote Pol II-dependent transcription and interact with multiple miRNA biogenesis factors in Arabidopsis |
| GSE44062 |
Analysis of the nitrate-responsive transcriptome of the Arabidopsis root |
| GSE48810 |
Digital gene expression of WT and gi mutant under control and drought conditions in Arabidopsis |
| GSE51578 |
Natural Variation and Timing of Stress Responses Promote and Predict Heterosis |
| GSE52346 |
miRNAs trigger widespread epigenetically-activated siRNAs from transposons in Arabidopsis (bisulfite-seq) |
| GSE52952 |
miRNAs trigger widespread epigenetically-activated siRNAs from transposons in Arabidopsis |
| GSE53078 |
HBI1 integrates hormonal and environmental signals to regulate the trade-off between growth and immunity (RNA-seq) |
| GSE53099 |
HBI1 integrates hormonal and environmental signals to regulate the trade-off between growth and immunity (ChIP-seq) |
| GSE53100 |
HBI1 integrates hormonal and environmental signals to regulate the trade-off between growth and immunity |
| GSE55893 |
Genome-wide binding sites of AtDEK3 in Arabidopsis thaliana. |
| GSE58034 |
The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation independent manner [SELEX] |
| GSE60835 |
Arabidopsis De-etiolated 1 Represses Photomorphogenesis by Positively Regulating Phytochrome Interacting Factors in the Dark |
| GSE61028 |
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. |
| GSE62478 |
RNA-seq analysis of alternative splicing between two Arabidopsis accessions and its inheritance in hybrid |
| GSE62615 |
Natural variation of H3K27me3 modification between two Arabidopsis accessions and its inheritance in hybrid |
| GSE74160 |
Divergence of alternative splicing in Arabidopsis |
| GSE76648 |
Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis [BS-seq] |
| GSE76649 |
Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis [small RNA-seq] |
| GSE76651 |
Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis |
| GSE77211 |
Identification of microRNA targets in Arabidopsis by transcriptome profiling of wild-type and ago1-27 mutant plants |
| GSE78118 |
RNA-seq analysis of transcriptomes in cae2-1, CA1-1 and cae2-1 CA1-1 Arabidopsis genotypes |
| GSE79414 |
An Integrated miRNA Expression Atlas of Arabidopsis thaliana |
| GSE84728 |
Degradome sequencing of Arabidopsis ago1-27 mutant |
| GSE87917 |
Analysis of eH3.3 occupancy in a ATRX loss-of-function line [ChIP-seq] |
| GSE87918 |
Analysis of gene expression and of H3.3 distribution and abundance in a ATRX loss-of-function line |
| GSE94926 |
Genome-wide binding sites for RGA in Arabidopsis inflorescence apices |
| GSE106309 |
Bisulfite methylome sequencing of msh1 memory line in arbidopsis [Bisulfite-seq] |
| GSE106536 |
mRNA sequencing of msh1 memory line in arbidopsis |
| GSE117315 |
Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation |
| GSE117318 |
Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation |
| GSE129589 |
Investigation of different gene expression of putative tt mutants under AIC condition using RNA-seq |
| GSE157332 |
Genome-wide binding sites for Arabidopsis ATH1 |
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| Supplementary data files not provided |
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