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Series GSE11086 Query DataSets for GSE11086
Status Public on Apr 30, 2008
Title Deep sequencing of Drosophila melanogaster small RNAs
Organisms Drosophila melanogaster; Flock House virus
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary High throughput seqeuncing of small RNAs (PAGE isolated from total RNA or Argonaute immunoprecipitates) from Drosophila melanogaster using the Illumina platform. Adapter ligation requires 5' monophosphate and 3' OH.
Full analysis of all libraries in this set is published (Czech B. et al. 2008), leading to the description of endogenous siRNAs in flies.
Keywords: Solexa sequences
Overall design 7 libraries; each seqeunced once
Citation(s) 18463631
Submission date Apr 07, 2008
Last update date Jun 11, 2013
Contact name Julius Brennecke
Organization name Cold Spring Harbor Labs
Lab Greg Hannon
Street address 1 Bungtown Road
City Cold Spring Harbor
State/province NY
ZIP/Postal code 11724
Country USA
Platforms (2)
GPL9058 Illumina Genome Analyzer (Drosophila melanogaster)
GPL9402 Illumina Genome Analyzer (Flock house virus)
Samples (9)
GSM280082 WT ovaries (18-29nt)
GSM280083 dcr-2-/- ovaries (18-29nt)
GSM280084 loqs-/- ovaries (18-29nt)
BioProject PRJNA107077

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE11086_RAW.tar 534.6 Mb (http)(custom) TAR (of TXT)
Raw data provided as supplementary file
Processed data included within Sample table

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