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Series GSE111294 Query DataSets for GSE111294
Status Public on Apr 10, 2018
Title An exploratory study to examine the effects of maternal choline supplementation during mouse pregnancy on placental epigenetic markers (mRNA-seq data set)
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary This study sought to explore the effects of 4X maternal choline supplementation (MCS) on mRNA and miRNA abundance in mouse placentas collected on gestational day 15.5. These data advance our understanding about the importance of choline in reproductive health and will guide future mechanistic studies designed to elucidate the mechanisms mediating choline's beneficial effects.
 
Overall design mRNA sequencing was performed on 6 placental samples (3 males and 3 females) from 1X control choline diet group and 6 placental samples (3 males and 3 females) from 4X choline diet group
 
Contributor(s) Caudill MA, Roberson MS, Kwan S, Grenier JK
Citation(s) 29597262
Submission date Mar 01, 2018
Last update date Mar 25, 2019
Contact name Jennifer K Grenier
Organization name Cornell University
Department Biomedical Sciences
Lab Biotechnology Building rm 333
Street address 526 Campus Rd
City Ithaca
State/province NY
ZIP/Postal code 14853
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (12)
GSM3028057 222: 1X choline male rep 1 (mRNA)
GSM3028058 234: 1X choline male rep 2 (mRNA)
GSM3028059 273: 1X choline male rep 3 (mRNA)
This SubSeries is part of SuperSeries:
GSE111296 An exploratory study to examine the effects of maternal choline supplementation during mouse pregnancy on placental epigenetic markers
Relations
BioProject PRJNA436482
SRA SRP133742

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE111294_allSamples_gene_exp.diff.gz 796.3 Kb (ftp)(http) DIFF
GSE111294_allSamples_genes.read_group_tracking.txt.gz 3.1 Mb (ftp)(http) TXT
GSE111294_female_gene_exp.diff.gz 793.1 Kb (ftp)(http) DIFF
GSE111294_female_genes.read_group_tracking.txt.gz 1.6 Mb (ftp)(http) TXT
GSE111294_male_gene_exp.diff.gz 793.6 Kb (ftp)(http) DIFF
GSE111294_male_genes.read_group_tracking.txt.gz 1.6 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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