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Series GSE113366 Query DataSets for GSE113366
Status Public on Aug 07, 2019
Title Differential transcriptome dynamics during the onset of conceptus elongation and between female and male porcine embryos
Organism Sus scrofa
Experiment type Expression profiling by high throughput sequencing
Summary this study was designed to analyze global gene expression in porcine embryos during the preimplantation period (Day 8, 10, and 12 of pregnancy) with the aims of (i) characterizing the dynamics of gene expression profiles and the involved functions and thereby (ii) identifying the chromosome X inactivation profile between female and male
 
Overall design Female and male embryos were isolated from three stages (Day 8, 10, and 12) (each group n=5), respectively, and then subjected to RNA-sequencing (RNA-Seq).
Web link https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-6044-z
 
Contributor(s) Zeng S, Bick J, Bauersachs S, Ulbrich SE
Citation(s)
  • Zeng S, Bick J, Kradolfer D, Knubben J et al. Differential transcriptome dynamics during the onset of conceptus elongation and between female and male porcine embryos. BMC Genomics 2019 Aug 28;20(1):679. PMID: 31462226
Submission date Apr 19, 2018
Last update date Oct 29, 2019
Contact name Stefan Michael Bauersachs
E-mail(s) stefan.bauersachs@uzh.ch
Organization name University of Zurich
Department Department for Farm Animals
Lab Genetics and Functional Genomics
Street address Eschikon 27 EHB 23.1
City Lindau
State/province Zurich
ZIP/Postal code 8315
Country Switzerland
 
Platforms (1)
GPL19176 Illumina HiSeq 2500 (Sus scrofa)
Samples (30)
GSM3104323 d08_f_105: female embryo on Day8
GSM3104324 d08_f_109: female embryo on Day8
GSM3104325 d08_f_124: female embryo on Day8
Relations
BioProject PRJNA450925
SRA SRP141121

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE113366_All_cpm.xlsx 6.8 Mb (ftp)(http) XLSX
GSE113366_All_for_EdgeR.txt.gz 694.4 Kb (ftp)(http) TXT
GSE113366_Day08_cpm.xlsx 2.1 Mb (ftp)(http) XLSX
GSE113366_Day08_for_EdgeR.txt.gz 237.4 Kb (ftp)(http) TXT
GSE113366_Day10_cpm.xlsx 2.1 Mb (ftp)(http) XLSX
GSE113366_Day10_for_EdgeR.txt.gz 240.9 Kb (ftp)(http) TXT
GSE113366_Day12_cpm.xlsx 2.3 Mb (ftp)(http) XLSX
GSE113366_Day12_for_EdgeR.txt.gz 249.6 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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