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Series GSE117296 Query DataSets for GSE117296
Status Public on Dec 21, 2018
Title Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [Timecourse]
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Transcriptome profiling (RNA-seq) of local and systemic leaves of Arabidopsis Col and rbohD plants exposed to a local treatment of high light
 
Overall design Local leaves of 4– to 5-week-old Col (WT) and rbohD plants were exposed to a light intensity of 2000 µmol m-2 sec-1 for periods of 0, 2, 4 and 8 min using a gooseneck light source (ACE I; Schott). Total RNA of local and systemic tissue were used and single-end sequenced reads were obtained from the Illumina NExtSeq platform
 
Contributor(s) Zandalinas SI, Sengupta S, Burks D, Azad RK, Mittler R
Citation(s) 30556340
Submission date Jul 18, 2018
Last update date Dec 21, 2018
Contact name Soham Sengupta
Organization name St. Jude Children's Research Hospital
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (48)
GSM3290595 Col_Control_0min_Local Leaf_rep_1
GSM3290596 Col_Control_0min_Systemic Leaf_rep_1
GSM3290597 Col_Highlight_2min_Local Leaf_rep_1
This SubSeries is part of SuperSeries:
GSE117300 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light
Relations
BioProject PRJNA481720
SRA SRP154321

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE117296_normalized_counts_experiment1_local_leaf.txt.gz 1.6 Mb (ftp)(http) TXT
GSE117296_normalized_counts_experiment1_systemic_leaf.txt.gz 1.6 Mb (ftp)(http) TXT
GSE117296_normalized_counts_experiment2_local_leaf.txt.gz 1.5 Mb (ftp)(http) TXT
GSE117296_normalized_counts_experiment2_systemic_leaf.txt.gz 1.7 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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