GSE77017 |
SHORT-ROOT Deficiency Alleviates the Cell Death Phenotype of the Arabidopsis catalase2 Mutant under Photorespiration-Promoting Conditions |
GSE77170 |
Arabidopsis GLYCOLATE OXIDASE 1 and 2 display divergent roles under conditions promoting photorespiration |
GSE77171 |
Photorespiratory stress in catalase deficient plants |
GSE79259 |
The second subunit of DNA-polymerase delta is required for genomic stability and epigenetic regulation |
GSE79353 |
Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [RNA-seq I] |
GSE79354 |
Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [ChIP-seq & Mnase-seq] |
GSE79355 |
Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana |
GSE79676 |
Bisulfite-Seq and RNA-seq profiling of Arabidopsis aneuploids |
GSE79738 |
Requirement for flap endonuclease 1 (FEN1) to maintain genomic stability and transcriptional gene silencing in Arabidopsis |
GSE79746 |
Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation |
GSE80300 |
A comparative analysis of 5-azacytidine and zebularine induced DNA demethylation using whole-genome bisulfite sequencing |
GSE83108 |
Nascent RNA sequencing reveals distinct features in Plant transcription |
GSE83262 |
Dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator in Arabidopsis |
GSE84483 |
ChIP-seq for Polycomb and associated transcription factors in Arabidopsis |
GSE85203 |
Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes |
GSE86583 |
Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis |
GSE87170 |
DNA methylation inheritance across generations |
GSE87348 |
ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis [AGO10OE] |
GSE87351 |
ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis [AGO10SDN] |
GSE87355 |
ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis |
GSE89591 |
DNA sequence properties that determine susceptibility to epiallelic switching [Bisulfite-Seq] |
GSE89592 |
DNA sequence properties that determine susceptibility to epiallelic switching |
GSE89768 |
POWERDERESS and HDA9 interact and promote histone H3 deacetylation at specific lysine residues in Arabidopsis. [ChIP-Seq] |
GSE89769 |
POWERDERESS and HDA9 interact and promote histone H3 deacetylation at specific lysine residues in Arabidopsis. [RNA-Seq] |
GSE89770 |
POWERDERESS and HDA9 interact and promote histone H3 deacetylation at specific lysine residues in Arabidopsis. |
GSE89913 |
Cytosine methylation at CpCpG sites triggers accumulation of non-CpG methylation in gene bodies |
GSE90061 |
Whole genome RNA-sequencing from root tips ofArabidopsis thalianalow-phosphate insensitive mutants under High and Low phosphate |
GSE90925 |
Mechanism of early light signaling by the carboxy-terminal output module of Arabidopsis phytochrome B |
GSE93024 |
TET-mediated epimutagenesis of the Arabidopsis thaliana methylome |
GSE93358 |
Functional analysis of the Arabidopsis thaliana Pol V largest subunit, NRPE1, carboxy-terminal domain by whole genome bisulfite sequencing |
GSE93360 |
Functional analysis of the RNA polymerase V CTD |
GSE93560 |
Elf18-induced long noncoding RNA associates with Mediator to enhance expression of innate immune response genes in Arabidopsis |
GSE94298 |
Stable Inheritance of Spontaneous Epialleles in Arabidopsis thaliana |
GSE94308 |
Control of plant cell fate transitions by transcriptional and hormonal signals [RNA-seq: cyc-mock_vs_cyc-dex_3h] |
GSE94309 |
Control of plant cell fate transitions by transcriptional and hormonal signals [RNA-seq: mock_vs_dex_3h] |
GSE94311 |
Control of plant cell fate transitions by transcriptional and hormonal signals |
GSE94459 |
methylC-seq, RNA-seq and sRNA-seq data over Arabidopsis thaliana germination |
GSE94900 |
Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [RNA-Seq II] |
GSE94983 |
Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary? |
GSE95373 |
Plant development on ISS differes from the development on the ground and is influenced by the genetic background. |
GSE95562 |
ChIP-seq for Polycomb repressive complex 2 in wild type and mutants in Arabidopsis |
GSE95582 |
During development, the Sku6 mutant roots engage different genes than wild type Col-0 roots, either on the ground or in spaceflight. |
GSE95620 |
During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight. |
GSE95823 |
Assessment of the Pol IV largest subunit, NRPD1, DeCL domain deletion construct to rescue Pol IV-dependent DNA methylation in the nrpd1-3 mutant (Bisulfite-Seq). |
GSE95824 |
Assessment of the Pol IV largest subunit, NRPD1, DeCL domain deletion construct to rescue Pol IV-dependent siRNAs in the nrpd1-3 mutant (sRNA). |
GSE95825 |
Functional analysis of the Pol IV DeCL domain |
GSE96041 |
Chloroplast signalling gates thermotolerance in Arabidopsis |
GSE97288 |
ENAP1 is involved in ethylene response |
GSE99413 |
RNAseq data for Arabidopsis TF mutants during germination |
GSE100298 |
Dyw2-DYW2_OTP100: Identification of the transcriptome defects (nuclear and organelles) of the T-DNA KO mutants of DYW2 and OTP100 |
GSE101482 |
ATAC-seq profiling of open chromatin in the root tips of four plant species (Arabidopsis thaliana, Medicago truncatula, Solanum lycopersicum, and Oryza sativa) and two Arabidopsis thaliana cell types (root hair and non-hair epidermal cells) |
GSE101940 |
ATAC-seq profiling of open chromatin in Arabidopsis thaliana shoot apical meristem stem cells and leaf mesophyll cells. |
GSE102126 |
Whole-genome resequencing of T-DNA insertion lines |
GSE103041 |
Transcriptome expression of WT, 160OE, arf10, arf16, and arf17 Arabidopsis seedlings treated with/without heat stress |
GSE103924 |
Topoisomerase VI participates to a chromatin barrier-like function that prevents heterochromatin spreading in euchromatic islands (HTS) |
GSE104665 |
Chromatin remodeler SPLAYED maintains the balance of miR156 dependent developmental pathways in Arabidopsis |
GSE106110 |
The effect of MAC3 and MAC5A on small RNA accumulation |
GSE106112 |
microRNA-triggered transposon small RNAs mediate genome dosage response (Bisulfite-Seq) |
GSE106114 |
microRNA-triggered transposon small RNAs mediate genome dosage response (sRNA-Seq) |
GSE106117 |
microRNA-triggered transposon small RNAs mediate genome dosage response |
GSE108450 |
The histone variant H2A.Z and chromatin remodeler BRAHMA act coordinately and antagonistically to regulate transcription and nucleosome dynamics in Arabidopsis |
GSE108487 |
Genome-wide profilings of EDM2-mediated effects on H3K9me2 and transcripts in Arabidopsis thaliana |
GSE108490 |
Genome-wide profiling of EDM3 dependent H3K9me2 in Arabidopsis thaliana |
GSE108857 |
SWI/SNF subunit CHR2 remodels pri-miRNAs via microprocessor component SE to inhibit miRNA production DMS-MaPseq) |
GSE108859 |
SWI/SNF subunit CHR2 remodels pri-miRNAs via microprocessor component SE to inhibit miRNA production |
GSE108987 |
Transcriptome analysis of isoxaben-induced loss of cell wall integrity in Arabidopsis seedling liquid culture |
GSE109101 |
The Evening Complex Establishes Repressive Chromatin Domains via H2A.Z-Nucleosome Deposition in Arabidopsis |
GSE109613 |
Transcriptome analysis of isoxaben-induced loss of cell wall integrity in Arabidopsis nia1/2 mutant |
GSE109974 |
RNA polymerase II activity revealed by GRO-seq and pNET-seq in Arabidopsis |
GSE110605 |
Molecular basis of flowering under natural long-day conditions in Arabidopsis |
GSE111284 |
Singlet oxygen induced RNA oxidation and translational arrest [flu mutant] |
GSE111285 |
Singlet oxygen induced RNA oxidation and translational arrest [DCMU] |
GSE111286 |
Singlet oxygen induced RNA oxidation and translational arrest [CHX] |
GSE111287 |
Singlet oxygen induced RNA oxidation and translational arrest [RB] |
GSE111288 |
Singlet oxygen induced RNA oxidation and translational arrest |
GSE112441 |
Gene expression profiling by RNA-seq of wild-type, fpa mutant, bdr1 mutant, bdr2 mutant, bdr3 mutant and bdrs triple mutant Arabidopsis seedlings |
GSE112442 |
Gene expression profiling (RNA-seq) in wild-type and bdrs triple mutant Arabidopsis seedlings in response to light or to a heat shock |
GSE112443 |
RNA-seq, ChIP-seq and MNase-seq in WT, fpa mutant and bdr1,2,3 mutant Arabidopsis seedlings |
GSE112889 |
ZINC-FINGER interactions mediate transcriptional regulation of hypocotyl growth in Arabidopsis |
GSE112950 |
DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis [RNA-seq] |
GSE112951 |
DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis [ChIP-seq] |
GSE112952 |
DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis |
GSE112965 |
Genome-wide mapping of H3K27ac marked regions during flower development |
GSE113059 |
Genome-wide occupancy of BDR1, BDR2 and FPA (ChIP-seq) |
GSE113076 |
Genome-wide profiling of nucleosomes (MNase-seq), total H3, H3K4me2, H3K4me3 and H3K36me3 (native ChIP-seq) in wild-type, fpa mutant and bdrs triple mutant |
GSE113078 |
Genome-wide profiling (ChIP-seq) of RNA polymerase II in wild-type, fpa mutant and bdrs triple mutant |
GSE113138 |
Transcript profile analysis suggests marker genes to distinguish between Phase 0 and Phase 1 responses of Arabidopsis to salt stress |
GSE113677 |
Transcription-driven Chromatin Repression of Intragenic Promoters |
GSE113894 |
The KNOXI gene SHOOT MERISTEMLESS regulates floral fate in Arabidopsis |
GSE114073 |
SMA1, a homolog of the splicing factor Prp28, has a multifaceted role in miRNA biogenesis in Arabidopsis |
GSE114075 |
Biogenesis of a young, 22-nt microRNA in Phaseoleae species by precursor-programmed uridylation |
GSE114185 |
DEK controls the trade-off between growth and arrest via H2A.Z-nucleosomes in Arabidopsis |
GSE114363 |
Discovery of a novel plant eIF4E-binding protein: Conserved Binding of eIF4E 1 (CBE1) |
GSE114418 |
Genome-wide analysis of transcription in dek3 mutants and DEK3-over expressors [2 temperatures at 2 time points] |
GSE114615 |
Molecular Mechanisms Driving Switch Behavior in Xylem Cell Differentiation |
GSE114641 |
Genome-wide analysis of transcription in dek3 mutants and DEK3-over expressors [8 time points] |
GSE114646 |
Genome-wide analysis of transcription in dek3 mutants and DEK3-over expressors |
GSE114696 |
Plant Extracellular Vesicles Contain Diverse Small RNA Species and Are Enriched in 10 to 17 Nucleotide "Tiny" RNAs. |
GSE114958 |
Virus-mediated export of chromosomal DNA in plants |
GSE115001 |
A spatiotemporal DNA endoploidy map of the Arabidopsis root reveals roles for the endocycle in root development and stress adaptation |
GSE115428 |
Global transcriptomic response to chilling temperature in Col-0 wild type and sig5-3 (SALK_141383C) mutant Arabidopsis plants. |
GSE115554 |
Comparative gene expression analysis in the Arabidopsis thaliana root apex using RNA-seq and microarray transcriptome profiles [RNA-seq] |
GSE115555 |
Comparing RNA-Seq and microarray gene expression data in two zones of the Arabidopsis root apex relevant to spaceflight |
GSE115583 |
Widespread inter-individual gene expression variability in Arabidopsis thaliana |
GSE115951 |
RNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling |
GSE116004 |
Contribution of time of day and the circadian clock to the heat stress responsive transcriptome in Arabidopsis |
GSE116502 |
A conserved odor detection pathway via modulation of chromatin and cellular gene expression |
GSE116914 |
Identification of the targets of RNA binding protein NSRa [RIP-seq] |
GSE117052 |
Transcriptome analysis of apoplastic reactive oxygen species signaling in Arabidopsis thaliana accessions with varying ozone sensitivity. |
GSE117114 |
Phytochrome B-SPA-COP1 regulation of red light induced gene expressions in Arabidopsis thaliana |
GSE117199 |
Transcriptome analysis of Arabidopsis thaliana photoreceptor mutants impaired in UV and blue light signaling |
GSE117296 |
Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [Timecourse] |
GSE117297 |
Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [H2O2] |
GSE117298 |
Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [DPI] |
GSE117300 |
Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light |
GSE117344 |
The nuclear general transcription factor TFIIFa interacts with the Topoisomerase VI complex and selectively controls the expression of genes encoding PPR proteins involved in organellar RNA editing. |
GSE117391 |
Methyl-CpG-binding domain 9 (MBD9) is required for H2A.Z incorporation into chromatin at a subset of H2A.Z-enriched regions in the Arabidopsis genome |
GSE117797 |
ELONGATED HYPOCOTYL 5 mediates blue light signalling to the Arabidopsis circadian clock |
GSE117857 |
Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors |
GSE118695 |
Methylome of the Arabidopsis mRNA export mutant aly1 and associated controls |
GSE118709 |
Methylome, transcriptome, RIP-seq and small RNA-seq of the Arabidopsis mRNA export mutant aly1 and associated controls |
GSE119304 |
Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation |
GSE119344 |
RNA-Seq on mpk8 and tcp14 mutants on dry and imbibited seeds - Dormancy release by phosphorylation |
GSE119655 |
Small is big in Arabidopsis mitochondrial ribosome |
GSE120003 |
Analysis of arabidopsis mutants tor/lst8/yak1/maktor |
GSE120519 |
Natural depletion of H1 in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation |
GSE120571 |
Mobilization of Pack-CACTA transposons in Arabidopsis suggests the mechanism of gene shuffling |
GSE121150 |
Excess light priming in Arabidopsis thaliana genotypes with altered DNA methylomes |
GSE121619 |
Dynamics of gene expression in single root cells of A. thaliana |
GSE121927 |
Detection of internal N7-methylguanosine (m7G) RNA modifications by mutational profiling sequencing |
GSE122394 |
DNA methylation and histone H1 jointly repress transposable elements and aberrant intragenic transcripts |
GSE122454 |
AT-hook transcription factors repress petiole growth by antagonizing PIF4 [RNA-seq] |
GSE122455 |
AT-hook transcription factors repress petiole growth by antagonizing PIF4 [ChIP-seq] |
GSE122456 |
AT-hook transcription factors repress petiole growth by antagonizing PIF4 |
GSE122617 |
Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction |
GSE122677 |
Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression |
GSE122687 |
High-throughput single-cell transcriptome profiling of plant cell types |
GSE124003 |
Genome-wide analysis of transcription and PIF7 DNA binding in response to long days with daily oscillating temperatures in Arabidopsis thaliana |
GSE124296 |
H3K4me3 profiling in HUB1 Arabidopsis mutant seedlings |
GSE124319 |
ChIP-seq and RNA-seq in HUB1 and SWD2 Arabidopsis mutant seedlings |
GSE124812 |
RNAseq for finding splicing events in Arabidopsis prefoldin and lsm8 mutants in different environmental conditions |
GSE127300 |
Expression of a dominant‐negative AtNEET‐H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis |
GSE127574 |
Genome-wide profiling of Arabidopsis thaliana Col-0 and ein2/jar1 host responses to Macrophomina phaseolina infection |
GSE127745 |
PIF7 DNA binding in response to long days with daily oscillating temperatures in Arabidopsis thaliana |
GSE128209 |
Nitrogen and cycloheximide effects on protoplast and TF-target identification in the TARGET assay |
GSE128427 |
RNAseq of Arabidopsis wild-type (WT)-expressing aequorin and card1-2 mutant (WT-expressing aequorin background) in response to DMBQ or DMSO treatment at 0 hr, 0.5 hr, 1 hr and 6 hr |
GSE128434 |
The prevalence, evolution and chromatin signatures of plant regulatory elements |
GSE128510 |
RNA-seq of Arabidopsis wild-type (WT)-expressing aequorin and card1 mutants (WT-expressing aequorin background) in response to DMBQ. |
GSE128932 |
Arabidopsis retrotransposon virus-like-particles and their regulation by epigenetically activated small RNA |
GSE129016 |
Expression levels of inositol phosphorylceramide synthase modulate plant responses to biotic and abiotic stress in Arabidopsis thaliana |
GSE129249 |
Topoisomerase VI participates to a chromatin barrier-like function that prevents heterochromatin spreading in euchromatic islands |
GSE129523 |
Transcript isoform sequencing reveals widespread promoter-proximal transcriptional termination in Arabidopsis |
GSE129532 |
Florigen family chromatin recruitment, competition and targets [ChIP-Seq] |
GSE130186 |
Selective egg cell polyspermy bypasses the triploid block |
GSE131227 |
HOS15 and HDA9 negatively regulate immunity through histone deacetylation on intracellular immune receptor NLR genes in Arabidopsis |
GSE131545 |
Enzymes degraded under high light maintain proteostasis by transcriptional regulation in Arabidopsis |
GSE131733 |
Transient genome-wide adaptations of nascent RNAPII transcription triggered by low temperature |
GSE131772 |
Genome-wide occupancy of BDR1 and BDR3 (ChIP-seq) |
GSE132005 |
Retrotransposon addiction promotes centromere function via epigenetically activated small RNAs |
GSE133182 |
SME1 deficiency results in oxidative stress tolerance |
GSE133321 |
Expression profiling by small RNA-seq for identifying miRNA associated with sound vibration in plant |
GSE133325 |
Identifying genes associated with sound vibration in plant |
GSE133618 |
Arabidopsis RNA Polymerase IV generates 21-22 nucleotide small RNAs that can participate in RNA-directed DNA methylation and may regulate genes |
GSE134079 |
Comparative transcriptome analysis of melatonin or auxin treated-Arabidopsis |
GSE134271 |
Lipophilic-Signals Lead to Organ-Specific Gene Expression Changes in Arabidopsis Seedlings |
GSE134391 |
Transcriptomic changes of Arabidopsis plants subjected to high light, heat stress and their combination |
GSE134516 |
A universal, benchtop, gel-free method for the rapid and simultaneous isolation of all known classes of functional small RNAs |
GSE135376 |
Splicing regulation by the lncRNA ASCO |
GSE135778 |
Whole genome RNA-sequencing from root tips of Arabidopsis thaliana med16-2 mutant under High and Low phosphate conditions |
GSE136177 |
A chemical and synthetic biology approach to control plant membrane receptor kinase signaling |
GSE136713 |
DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs |
GSE136847 |
Polymerase IV Plays a Crucial Role in Pollen Development in Capsella |
GSE137264 |
RNA-Seq and ChIP-Seq profiling of ELF3, an prion-like domain-containig in ELF3 that functions as a thermosensor in Arabidopsis. |
GSE137474 |
GCN5 modulates salicylic acid homeostasis by regulating H3K14ac levels at the 5ʹ and 3ʹ ends of its target genes |
GSE137645 |
ChIP-seq data from roots of the uri complementation line exposed to either Fe sufficient or Fe deficient conditions for 72 hours |
GSE138154 |
EIN3 positive feedback regulation on EIN2C-mediated histone acetylation and gene expression |
GSE138196 |
Integration of systemic signals in plants |
GSE138432 |
RNAseq in Arabidopsis prefoldin mutants |
GSE139715 |
Rocks in the Auxin Stream: Wound induced auxin accumulation and ERF115 expression synergistically drive stem cell regeneration |
GSE140294 |
An intact heterotrimeric G-Protein complex is required for the N-acylethanolamine-induced, transcriptionally-mediated chloroplast response in developing Arabidopsis seedlings |
GSE141188 |
Gene expression profile of Arabidopsis thaliana wild type and siz1-2 mutant during in vitro shoot regeneration on callus inducing media (CIM) and shoot inducing media (SIM) |
GSE141547 |
Arabidopsis MED8 functions in oxidative stress |
GSE141597 |
Naked1 targets Topless to up-regulate Auxin signaling and suppress immunity |
GSE141703 |
LFY is pioneer transcription factor [RNA-seq] |
GSE141704 |
LFY is pioneer transcription factor [ChIP-seq] |
GSE141705 |
LFY is pioneer transcription factor [MNase-seq] |
GSE141706 |
LFY is pioneer transcription factor |
GSE141893 |
Florigen family chromatin recruitment, competition and targets [RNA-Seq] |
GSE141894 |
Florigen family chromatin recruitment, competition and targets |
GSE142555 |
Characterization of Arabidopsis thaliana promoter bidirectionality and antisense RNAs by depletion of nuclear RNA decay pathways |
GSE142628 |
no treatment / nitrate starvation / nitrate induction-Study of the primary nitrate response (PNR) in nlp2 mutant and WT |
GSE142976 |
Multiple paths of plant host toxicity are associated with the fungal toxin cercosporin |
GSE143244 |
Involvement of Arabidopsis BIG protein in cell death mediated by Myo-Inositol homeostasis |
GSE144047 |
Transcriptional regulation of cell division and cytokinin response in Arabidopsis shoot apical meristem [ChIP-seq] |
GSE144049 |
Transcriptional regulation of cell division and cytokinin response in Arabidopsis shoot apical meristem |
GSE144560 |
Search for mitochondrial editing defect in an Arabidopsis PPR mutant |
GSE144674 |
half_edit - A new predictive method for E+ PPR binding |
GSE144849 |
Transcriptome analysis for comparing the overlap mis-regulated genes between impα triple and lhp1-3 mutants. |
GSE145109 |
The m6A reader CPSF30-L regulates alternative polyadenylation affecting nitrate signaling in Arabidopsis |
GSE145208 |
A dynamic network reveals the novel characteristics of miRNA regulation over time in response to the ABA hormone in Arabidopsis (microRNA) |
GSE145209 |
A dynamic network reveals the novel characteristics of miRNA regulation over time in response to the ABA hormone in Arabidopsis |
GSE145488 |
A dynamic pattern of local auxin sources is required for root regeneration |
GSE145580 |
Transcriptome profiling following knockdown of NAA50 in Arabidopsis |
GSE146913 |
Broad non-coding transcription suggests genome surveillance by RNA Polymerase V |
GSE147245 |
Small RNA-dependent epigenetic modifications in Arabidopsis thaliana embryos |
GSE147542 |
The position and complex genomic architecture of plant T-DNA insertions revealed by 4C |
GSE147962 |
Multifactorial stress combination |
GSE149654 |
Effect of flg22 peptide over transcriptome and nucleosome landscape of Arabidopsis on Col-0 and chromatin remodelling ATPase EDA16 mutants |
GSE149686 |
Warm temperature-triggered developmental reprogramming requires VIL1-mediated, genome-wide H3K27me3 accumulation in Arabidopsis |
GSE151005 |
Analysis of NPC48 overexpressing in Arabidopsis roots |
GSE151223 |
effect of ethylene rna-seq-RNA-seq ± Ethylene |
GSE151376 |
Coordination between the microbiota and the root diffusion barriers is required for plant mineral nutrient homeostasis |
GSE151449 |
The Arabidopsis epigenetic regulator ICU11 as an accessory protein of Polycomb Repressive Complex 2 |
GSE152163 |
Transcriptome analysis of p35S:AtBBD1 and atbbd1 (Knock-out) under PEG-induced drought stress condition |
GSE152166 |
Differentially expressed genes between WT and HRE1α OX, WT and HRE1β OX, and WT and AtRH17 OX |
GSE152405 |
ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks |
GSE152454 |
Transcriptome analysis of Arabidopsis thaliana roots, H2O2 and Rose Bengal [20180920_172844_1O_H2O2] |
GSE152455 |
Transcriptome analysis of Arabidopsis thaliana roots, H2O2 and Rose Bengal [20180920_173313_H2O2_RB] |
GSE152456 |
Transcriptome analysis of Arabidopsis thaliana shoots and roots, exposed to PEG-induced osmotic shock, PEG+Histidine, PEG+SHAM [20190311_172119_Peg_SHAMf1_res] |
GSE152457 |
Transcriptome analysis of Arabidopsis thaliana shoots and roots, exposed to PEG-induced osmotic shock, PEG+Histidine, PEG+SHAM [20190613_174740_sham_cont] |
GSE152458 |
Transcriptome analysis of Arabidopsis thaliana shoots and roots, exposed to PEG-induced osmotic shock, PEG+Histidine, PEG+SHAM [20191204_125511_PEG_SHOCK_II] |
GSE152459 |
Transcriptome analysis of Arabidopsis thaliana shoots and roots, exposed to PEG-induced osmotic shock, PEG+Histidine, PEG+SHAM [20191204_130529_uLox_PEG_Shock] |
GSE152462 |
A role for lipoxygenase in the production of 1O2 and promoting the root's response to osmotic stress in Arabidopsi |
GSE152909 |
Arabidopsis RBV is a conserved WD40 repeat protein that promotes microRNA biogenesis and ARGONAUTE1 loading [sRNA-seq] |
GSE152911 |
Arabidopsis RBV is a conserved WD40 repeat protein that promotes microRNA biogenesis and ARGONAUTE1 loading |
GSE153055 |
AlphaBeta: Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants |
GSE153171 |
The Root-Knot Nematode Effector MiEFF18 Targets the Core Spliceosomal Protein SmD1 and Facilitates Giant Cell Formation |
GSE154473 |
DEAD-box RNA helicase 27-Mediated MicroRNA Biogenesis Is Essential for Zygote Division and Stem Cell Homeostasis in Arabidopsis |
GSE155105 |
Chemical genetics approach identifies ABNORMAL INFLORESCENCE MERISTEM 1 as a putative target of a novel sulfonamide that protects Arabidopsis against photorespiratory stress [RNA-seq] |
GSE155502 |
Polycomb-dependent differential chromatin compartmentalization determines gene co-regulation in Arabidopsis |
GSE156268 |
A glycolytic enzyme enoalse negatively regulates plant immunity by repressing intracellular immune receptor NLR genes |
GSE156677 |
Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
GSE157145 |
Transcriptional and imprinting complexity in Arabidopsis seeds at single-nucleus resolution |
GSE157823 |
A pair of effectors in a conditionally dispensable chromosome of Fusarium oxysporum suppresses host-specific immunity |
GSE157965 |
Changes in DNA methylation in Arabidopsis thaliana plants exposed over multiple generations to gamma radiation |
GSE158444 |
Time of day prioritizes the pool of translating mRNAs in response to heat stress |
GSE158761 |
A single cell view of the transcriptome during lateral root initiation |
GSE158809 |
Schengen-pathway controls spatially separated and chemically distinct lignin deposition in the endodermis |
GSE159988 |
Genome-wide maps of H3K27me3 states in Arabidopsis thaliana flowers. |
GSE160410 |
Linker histones mediate sequence-specific regulation of chromosomal organization and H3K27me3 enrichment over genes and telomeric repeats (ChIP-RX) |
GSE160411 |
Linker histones mediate sequence-specific regulation of chromosomal organization and H3K27me3 enrichment over genes and telomeric repeats (ChIP-Seq) |
GSE160414 |
Linker histones mediate sequence-specific regulation of chromosomal organization and H3K27me3 enrichment over genes and telomeric repeats |
GSE161332 |
Single cell RNA sequencing of Col-0 leaf cell |
GSE161366 |
Histone H2B.8 compacts flowering plant sperm through chromatin phase separation |
GSE161482 |
Unique and distinct identities and functions of leaf phloem cells revealed by single cell transcriptomics |
GSE161625 |
Nurse cell-derived small RNAs define paternal epigenetic inheritance in Arabidopsis |
GSE161704 |
Natural variation in activation of KAI2/HTL pathway promotes germination in the dark in Arabidopsis |
GSE161970 |
Transcriptional dissection of lateral root primordium cells |
GSE162242 |
RNAseq Analysis of wild type and nrt1.13 in normal or low nitrate condition |
GSE163190 |
Transcript analysis under phosphate and iron deprivation in 7 day old Arabidopsis thaliana seedlings |
GSE163742 |
RNA-Seq of Col-0, dek3-2, dek4-2, and dek3-2 dek4-2 (dd-2) 7-day-old seedlings in Arabidopsis |
GSE163850 |
Chromatin architectural proteins regulate flowering time by precluding gene looping |
GSE164159 |
Evolution of conserved noncoding sequences (CNS) in Arabidopsis thaliana |
GSE166446 |
Riboseq analysis of the rfl8 mutant-Functional characterization of the pentatricopeptide repeat protein PPR RFL8 |
GSE166447 |
RNaseI-RIPseq for rfl8-Functional characterization of the pentatricopeptide repeat protein PPR RFL8 |
GSE166459 |
Nuclear compensation to a lineage-specific mitochondrial genomic rearrangement in plants |
GSE166543 |
Ribosomes act as cryosensors in plants |
GSE167135 |
Single-Cell Resolution of Lineage Trajectories in the Arabidopsis Stomatal Lineage and Developing Leaf |
GSE167879 |
The lncRNA APOLO and the methylcytosine-binding protein VIM1 are thermomorphogenesis regulators |
GSE168385 |
RNAseq samples of CNQX treated Arabidopsis roots regenerating at different time points. |
GSE168869 |
Reinforcement of transcriptional silencing by a positive feedback between DNA methylation and non-coding transcription |
GSE171157 |
Heterochromatin is a quantitative trait locus associated with spontaneous epiallele formation |
GSE171198 |
Repression of CHROMOMETHYLASE 3 Prevents Epigenetic Collateral Damage in Arabidopsis |
GSE171411 |
tRNA-seq of Arabidopsis leaves during pattern-triggered immunity |
GSE171459 |
A RALF-like peptide EaF82 derived from Epipremnum aureum inhibits pollen development in Arabidopsis and tobacco |
GSE171922 |
Characterization of 35S::TT2 and 35S::MYB5 overexpressors RUN2 |
GSE173338 |
Deceleration of the cell cycle underpins a switch from proliferative to terminal division in plant stomatal lineage |
GSE173375 |
RNA-seq analysis of dark-induced senescence of the leaves of Ran-GDP and Ran-GTP overexpression transgenic plants |
GSE173426 |
Nuclear and cytoplasmic RNA exosomes and PELOTA limit miRNA-induced secondary siRNA production |
GSE173834 |
The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution |
GSE174573 |
Two novel proteins with opposing m6A writing functions interact with HAKAI [meRIP-seq] |
GSE174656 |
AG- and AP3- domain specific FANS RNA-seq |
GSE175963 |
Whole-genome transcriptome analysis of tomato and Arabidopsis roots in the shade |
GSE176161 |
Gene expression during hormone-induced shoot regeneration in Arabidopsis thaliana explants exposed to different temperatures |
GSE176526 |
Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis |
GSE177028 |
Chaperone-like protein DAY plays critical roles in photomorphogenesis |
GSE178565 |
Mismatch hpRNA prevents intrinsic self-silencing and enhances RNAi stability |
GSE178645 |
Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells |
GSE178684 |
Molecular properties of epimutation hotspots |
GSE179635 |
Differential gene expression in seedlings of pi4kb1b2-Study of pi4kb1b2 mutant |
GSE179796 |
Histone H1 prevents non-CG methylation-mediated small RNA biogenesis in Arabidopsis heterochromatin |
GSE180818 |
Redundancies in low K signaling of neo-tetraploids leads in increased shoot K [RNA-seq_2] |
GSE180819 |
Redundancies in low K signaling of neo-tetraploids leads in increased shoot K |
GSE181260 |
Regulation of transpiration hinges on spatial differences in abscisic acid perception |
GSE182331 |
A single-cell transcriptomic atlas of A. thaliana seed germination |
GSE183118 |
Next Generation Sequencing Facillitates Quantitative Analysis of Wild Type and snrk1a1/a2 mutant Transcriptomes |
GSE183209 |
A GRAS family transcription factor negatively regulates cell division and positively affects cell size through SIM/SMR transcription |
GSE183785 |
Epigenetic inheritance mediates phenotypic evolution in natural populations |
GSE185033 |
Single seeds exhibit transcriptional heterogeneity during secondary dormancy induction |
GSE185225 |
Transcriptomics study of a temperature sensitive mutant (E170K, shot2) in CstF77, a subunit of 3' end mRNA maturation complex in Arabidopsis thaliana |
GSE186212 |
The trans-acting long noncoding RNA FLAIL represses flowering in Arabidopsis [RNA-seq] |
GSE186214 |
The trans-acting long noncoding RNA FLAIL represses flowering in Arabidopsis [ChIRP-seq] |
GSE186215 |
The trans-acting long noncoding RNA FLAIL represses flowering in Arabidopsis. |
GSE186586 |
mtran-Transcriptome analysis of mutants in uncharacterised mitochondrial proteins |
GSE186836 |
Evolutionarily conserved bacterial effectors hijack abscisic acid signaling to induce an aqueous microenvironment in the apoplast |
GSE187461 |
Chromatin-associated Microprocessor assembly is regulated by PRP40 – U1 snRNP auxiliary protein |
GSE188610 |
Two novel proteins with opposing m6A writing functions interact with HAKAI [RNA-seq] |
GSE188611 |
Two zinc finger proteins with functions in m6A writing interact with HAKAI |
GSE189262 |
SUPPRESSOR OF PHYTOCHROME B4#3 reduces the expression of PIF-activated genes and increases expression of growth repressors to regulate hypocotyl elongation in short days [ChIP-seq] |
GSE189264 |
SUPPRESSOR OF PHYTOCHROME B4#3 reduces the expression of PIF-activated genes and increases expression of growth repressors to regulate hypocotyl elongation in short days [RNA-seq] |
GSE189265 |
SUPPRESSOR OF PHYTOCHROME B4#3 reduces the expression of PIF-activated genes and increases expression of growth repressors to regulate hypocotyl elongation in short days |
GSE190825 |
Linker histones mediate sequence-specific regulation of chromosomal organization and H3K27me3 enrichment over genes and telomeric repeats [TRB1-GFP ChIP-seq] |
GSE192382 |
Influence of the downregulation of the MARS lncRNA (AT5G00580) of the response to Abscisic acid (ABA) in Arabidopsis |
GSE192407 |
HSFA2 and HSFA3 binding after heat acclimation [DAP-seq] |
GSE192427 |
HSFA2 and HSFA3 binding after heat acclimation [ChIP-seq] |
GSE192431 |
HSFA2 and HSFA3 binding after heat acclimation |
GSE192469 |
ELONGATED HYPOCOTYL (HY5) AND HY5 HOMOLOG (HYH) maintain shade avoidance suppression in sunlight |
GSE195912 |
Transcriptomic changes upon NaCl treatment dependent on GA biosynthesis and signaling. |
GSE196869 |
The application of a reverse transcriptase inhibitor suppresses LTR retrotransposon mobilization in plants [RNA-seq] |
GSE196969 |
PIF4/HEMERA-mediated daytime thermosensory growth requires the Mediator subunit MED14 |
GSE197099 |
TOR early response genes in plant shoots |
GSE197357 |
Identification of NLP2 in vivo targets using ChIP-Seq in Arabidopsis thaliana |
GSE197581 |
Clock controlled and cold induced CDF6 alters growth and development to changing temperatures |
GSE197614 |
RTEL1 is involved in transcriptional gene silencing and inhibition of heterochromatic DNA methylation |
GSE197718 |
A balance of de novo and maintenance activities governs epigenetic inheritance of CG methylation in Arabidopsis transposons |
GSE197932 |
RNAseq Quantitative Analysis of Arabidopsis Wild Type versus flavonoid 3' hydroxylase tt7 mutant |
GSE198873 |
In vitro, genomic context identification of transcription factor binding sites for bZIP C/S1 homodimers and heterodimers |
GSE199039 |
RRC1 is required for epidermal phyB siganling by maintaining the circadian rhythm by suppressing the alternative splicing of core clock genes. |
GSE199202 |
Transcriptome profiling of Arabidopsis roots upon lateral root induction in WT and TOR knock down [dataset1] |
GSE199203 |
Profiling of bulk and ribosome associated mRNA of Arabidopsis roots upon lateral root induction upon TOR activity inhibition with AZD8055 [dataset2] |
GSE199211 |
TOR acts as metabolic gatekeeper for auxin-dependent lateral root initiation in Arabidopsis thaliana |
GSE199312 |
Shade represses photosynthetic genes by disrupting the DNA binding of GOLDEN2-LIKE1 |
GSE200247 |
RNA-seq experiment of wild-type (WT) and pif4 mutant seedlings grown for 3 days in darkness and exposed or not to heat stress for 3 hours. |
GSE201015 |
Dynamics of mRNA fate during light stress and recovery: from transcription to stability and translation |
GSE201233 |
AGO4 slicer activity reveals the passenger strand function of plant 23 nt siRNAs and the post-slicing retention of target RNAs mediating RNA-directed DNA methylation [smallRNA-seq] |
GSE201234 |
AGO4 slicer activity reveals the passenger strand function of plant 23 nt siRNAs and the post-slicing retention of target RNAs mediating RNA-directed DNA methylation [WGBS] |
GSE201235 |
Enzymatic reactions of AGO4 in RNA-directed DNA methylation: siRNA duplex loading, passenger strand elimination, target RNA slicing, and sliced target retention |
GSE201648 |
RNA-seq analysis of Arabidopsis root with MBZ treatment |
GSE201838 |
Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis [DRIP-seq] |
GSE201839 |
Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis [Hi-C] |
GSE201840 |
Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis [sRNA-seq] |
GSE201841 |
Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis |
GSE203310 |
Dormancy heterogeneity among Arabidopsis thaliana seeds is linked to individual seed size |
GSE204767 |
Auxin biosynthesis drives developmental reprogramming of differentiated cells |
GSE204774 |
CONSTANS and jasmonate signaling coordinate floral senescence in Arabidopsis |
GSE204837 |
A quantitative model of MET1-catalyzed establishment and epigenetic inheritance of DNA methylation |
GSE205861 |
Plastid and cytoplasmic origins of 1O2-mediated gene responses |
GSE205893 |
Histone Deacetylase Complex 1 moderates stress responsiveness of germinating seeds via a histone-1-dependent process [RNA-Seq] |
GSE206054 |
Histone Deacetylase Complex 1 moderates stress responsiveness of germinating seeds via a histone-1-dependent process [ChIP-Seq] |
GSE206055 |
Histone Deacetylase Complex 1 moderates stress responsiveness of germinating seeds via a histone-1-dependent process |
GSE206890 |
Multi-omics profiling of 5 Arabidopsis accessions in response to combined water and nitrogen deficiencies |
GSE207358 |
Influence of the downregulation of the ARES lncRNA (AT4G14548) on gene regulation in Arabidopsis thaliana |
GSE207509 |
Transcriptomic analyses to estimated poly(A)-tail lengths in paps1-1 mutant pollen tubes |
GSE208151 |
Protein farnesylation is involved in the adaptation of Arabidopsis to nitrogen starvation |
GSE210734 |
RNA-seq analysis of total RNA from inflorescence stems of Arabidopsis Col-0, ccr-1, fer-4 and ccr-1/fer-4 |
GSE210828 |
The Human UPAT and the Arabidopsis APOLO lncRNA regulated a comparable set of genes in Arabidopsis |
GSE211494 |
Retrograde Control of Cytosolic Translation Targets Synthesis of Plastid Proteins and Nuclear Responses for High-Light Acclimation. |
GSE212021 |
HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress [ncRNA-Seq] |
GSE212022 |
HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress |
GSE212826 |
Gene expression profile of Arabidopsis root tip cells exposed to 2 hours of 50µM jasmonate |
GSE218234 |
Histone retention preserves epigenetic marks during heat stress-induced transcriptional memory |
GSE218481 |
ChIP-seq analysis of E2FA, E2FB, E2FC and RBR targets |
GSE218944 |
Local light signalling at the leaf tip drives remote differential petiole growth through auxin-gibberellin dynamics |
GSE220449 |
Dissecting the Arabidopsis/downy mildew interaction by haustoriated cell-specific RNA profiling |
GSE222657 |
CONSTANS alters the circadian clock in Arabidopsis thaliana |
GSE222751 |
Pseudouridine in small RNAs |
GSE222967 |
Transcriptomic analysis of rps6 mutants in Arabidopsis thaliana |
GSE223459 |
Genomic methylation patterns in pre-meiotic gynoecia of wild-type and RdDM mutants of Arabidopsis |
GSE223589 |
Coding and noncoding transcriptomes of NODULIN HOMEOBOX (NDX) deficient Arabidopsis inflorescence [RNA-Seq] |
GSE223590 |
Coding and noncoding transcriptomes of NODULIN HOMEOBOX (NDX) deficient Arabidopsis inflorescence [ncRNA-Seq] |
GSE223591 |
Coding and noncoding transcriptomes of NODULIN HOMEOBOX (NDX) deficient Arabidopsis inflorescence |
GSE224214 |
RNAseq analysis of wild-type and npf8.4 under normal or 2-day N-depleted condition |
GSE224694 |
Oxygen-sensing through ERFVII action and modulation in Arabidopsis thaliana |
GSE224928 |
Transcriptome of radially growing Arabidopsis wild type and d14 mutant hypocotyls with single cell resolution revealed by nucleus RNA-seq using 10x Chomium and VASA-seq |
GSE226508 |
Guidelines for performing Ribosome Profling in Plants Including Structural Analysis of rRNA fragments |
GSE227564 |
Identification of cell-types in Arabidopsis callus |
GSE230100 |
DRMY1 promotes robust morphogenesis by sustaining translation of a hormone signaling protein |
GSE230228 |
Pseudouridine in small RNAs |
GSE231563 |
Chromatin remodeling of histone H3 variants by DDM1 underlies epigenetic inheritance of DNA methylation [ChIP-seq] |
GSE231564 |
Chromatin remodeling of histone H3 variants by DDM1 underlies epigenetic inheritance of DNA methylation [bisulfite-seq] |
GSE231565 |
Chromatin remodeling of histone H3 variants by DDM1 underlies epigenetic inheritance of DNA methylation. |
GSE233271 |
COP1 controls light-dependent chromatin remodeling in Arabidopsis [ChIP-Seq] |
GSE233272 |
COP1 controls light-dependent chromatin remodeling in Arabidopsis [RNA-Seq] |
GSE233273 |
COP1 controls light-dependent chromatin remodeling in Arabidopsis |
GSE233927 |
Comparative analysis of nascent transcription among plant species |
GSE234377 |
ideas-IDEAS project on nitrogen starvation |
GSE236147 |
ELONGATED HYPOCOTYL5-mediated light signaling promotes shoot regeneration in Arabidopsis thaliana |
GSE236628 |
The unique dual targeting of AGO1 by two types of PRMT enzymes promotes phasiRNA loading in Arabidopsis thaliana |
GSE242191 |
CLSY docking to Pol IV requires a conserved domain critical for small RNA biogenesis and transposon silencing. |
GSE244846 |
The plant POLYMERASE-ASSOCIATED FACTOR1 complex links transcription and H2B monoubiquitination genome wide [ChIP-seq] |
GSE244848 |
The plant POLYMERASE ASSOCIATED FACTOR1 complex links transcription and H2B monoubiquitination genome-wide [RNA-seq] |
GSE244850 |
The plant POLYMERASE-ASSOCIATED FACTOR1 complex links transcription and H2B monoubiquitination genome wide |
GSE247242 |
rna-seq snap33-1 vs wt -Description of Arabidopsis thaliana t-SNARE SNAP33 |
GSE247348 |
Transcriptomic landscape of seedstick in Arabidopsis thaliana funiculus after fertilisation |
GSE248560 |
Identification of SR34a direct RNA targets in germinated seeds grown for 44 hours and exposed or not to ABA for 2 hours |
GSE248563 |
sr34a-1 mutant germinated seeds and exposure to ABA |
GSE249507 |
Modifiers of genetic dominance at the Arabidopsis self-incompatibility locus retain proto-miRNA features and act through non-canonical gene silencing pathways - AGO-IP data |
GSE249508 |
Modifiers of genetic dominance at the Arabidopsis self-incompatibility locus retain proto-miRNA features and act through non-canonical gene silencing pathways |
GSE249562 |
Imprinting but not cytonuclear interactions affects parent-of-origin effect on seed size in Arabidopsis hybrids |
GSE249736 |
High-throughput capture of transcription factor-driven chromatin dynamics using PHILO ChIP-seq (ChIP-seq) |
GSE249737 |
High-throughput capture of transcription factor-driven chromatin dynamics using PHILO ChIP-seq (RNA-Seq) |
GSE249738 |
High-throughput capture of transcription factor-driven chromatin dynamics using PHILO ChIP-seq |
GSE250329 |
Interplay between coding and non-coding regulation drives the Arabidopsis seed-to-seedling transition (csRNA-seq) |
GSE250331 |
Interplay between coding and non-coding regulation drives the Arabidopsis seed-to-seedling transition. |
GSE264403 |
Identification of cambium stem cell factors and their positioning mechanism |
GSE266158 |
Rhamnogalacturonan Lyase 1 (RGL1), as a suppressor of E3 ubiquitin ligase Arabidopsis thaliana Ring Zinc Finger 1 (AtRZF1), is involved in dehydration response to mediate proline synthesis and pectin rhamnogalacturonan-Ⅰ composition |
GSE267486 |
High-throughput capture of transcription factor-driven chromatin dynamics using PHILO [ChIP-seq 3] |
GSE267648 |
Time series study of ABA-treated Arabidopsis thaliana rosettes [Illumina TruSeq mRNA Stranded Sample Prep Kit] |
GSE267649 |
Time series study of ABA-treated Arabidopsis thaliana rosettes |
GSE267947 |
Terminal nucleotidyl transferases govern secondary siRNA production at distinct steps in plants |
GSE269849 |
bHLH transcription factors cooperate with chromatin remodelers to regulate cell fate decisions during Arabidopsis stomatal development |
GSE278853 |
High-throughput capture of transcription factor-driven chromatin dynamics using PHILO ChIP-seq [ChIP-seq 4] |