|
| Status |
Public on Aug 29, 2020 |
| Title |
SFP1 (RNA-seq) |
| Organisms |
Schizosaccharomyces pombe; Saccharomyces cerevisiae; Nakaseomyces glabratus; Naumovozyma castellii; Saccharomyces paradoxus; Kluyveromyces lactis |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We measured global expression profiles in SFP1 deletion mutants and isogenic wild type strains during lag and log phase growth. To match the physiology of each species as well as minimize the effect on gene expression from differences in early growth rates, we profiled expression during log growth and lag after glucose repletion as previously described (Thompson et al., 2013).
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| |
|
| Overall design |
For each species, there are three replicates (A,B,C). Each Sfp1 mutant was compared to the corresponding WT at the corresponding time point (lag phase) or stage of log phase growth.
|
| |
|
| Contributor(s) |
Delorey T, de Boer C, Knaack S, Roy S |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Aug 30, 2018 |
| Last update date |
Aug 29, 2020 |
| Contact name |
Carl G de Boer |
| Organization name |
The Broad Institute
|
| Lab |
Aviv Regev
|
| Street address |
415 Main St
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02139 |
| Country |
USA |
| |
|
| Platforms (6)
|
| GPL13821 |
Illumina HiSeq 2000 (Saccharomyces cerevisiae) |
| GPL13988 |
Illumina HiSeq 2000 (Schizosaccharomyces pombe) |
| GPL17602 |
Illumina HiSeq 2000 (Saccharomyces paradoxus) |
| GPL21165 |
Illumina HiSeq 2000 (Naumovozyma castellii) |
| GPL22158 |
Illumina HiSeq 2000 (Kluyveromyces lactis) |
| GPL22622 |
Illumina HiSeq 2000 ([Candida] glabrata) |
|
| Samples (58)
|
|
| This SubSeries is part of SuperSeries: |
| GSE119238 |
The roles of duplication and divergence in the evolution of a transcription factor |
|
| Relations |
| BioProject |
PRJNA488590 |
| SRA |
SRP159150 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE119237_Cgla.Gene.logFC.txt.gz |
370.9 Kb |
(ftp)(http) |
TXT |
| GSE119237_Cgla.OG.logFC.txt.gz |
283.3 Kb |
(ftp)(http) |
TXT |
| GSE119237_Cgla.TMM.txt.gz |
241.0 Kb |
(ftp)(http) |
TXT |
| GSE119237_Cgla.counts.txt.gz |
84.8 Kb |
(ftp)(http) |
TXT |
| GSE119237_Klac.Gene.logFC.txt.gz |
204.8 Kb |
(ftp)(http) |
TXT |
| GSE119237_Klac.OG.logFC.txt.gz |
151.4 Kb |
(ftp)(http) |
TXT |
| GSE119237_Klac.TMM.txt.gz |
184.6 Kb |
(ftp)(http) |
TXT |
| GSE119237_Klac.counts.txt.gz |
68.4 Kb |
(ftp)(http) |
TXT |
| GSE119237_Ncas.Gene.logFC.txt.gz |
426.0 Kb |
(ftp)(http) |
TXT |
| GSE119237_Ncas.OG.logFC.txt.gz |
290.5 Kb |
(ftp)(http) |
TXT |
| GSE119237_Ncas.TMM.txt.gz |
274.9 Kb |
(ftp)(http) |
TXT |
| GSE119237_Ncas.counts.txt.gz |
93.4 Kb |
(ftp)(http) |
TXT |
| GSE119237_OG_to_Scer-GNs.txt.gz |
30.9 Kb |
(ftp)(http) |
TXT |
| GSE119237_Scer.Gene.logFC.txt.gz |
482.7 Kb |
(ftp)(http) |
TXT |
| GSE119237_Scer.OG.logFC.txt.gz |
340.5 Kb |
(ftp)(http) |
TXT |
| GSE119237_Scer.TMM.txt.gz |
323.5 Kb |
(ftp)(http) |
TXT |
| GSE119237_Scer.counts.txt.gz |
119.6 Kb |
(ftp)(http) |
TXT |
| GSE119237_Spar.Gene.logFC.txt.gz |
160.7 Kb |
(ftp)(http) |
TXT |
| GSE119237_Spar.OG.logFC.txt.gz |
114.2 Kb |
(ftp)(http) |
TXT |
| GSE119237_Spar.TMM.txt.gz |
491.3 Kb |
(ftp)(http) |
TXT |
| GSE119237_Spar.counts.txt.gz |
150.0 Kb |
(ftp)(http) |
TXT |
| GSE119237_Spom.Gene.logFC.txt.gz |
193.9 Kb |
(ftp)(http) |
TXT |
| GSE119237_Spom.OG.logFC.txt.gz |
149.2 Kb |
(ftp)(http) |
TXT |
| GSE119237_Spom.TMM.txt.gz |
175.6 Kb |
(ftp)(http) |
TXT |
| GSE119237_Spom.counts.txt.gz |
100.1 Kb |
(ftp)(http) |
TXT |
| GSE119237_orthology_melted_aliases.txt.gz |
930.8 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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