|
| Status |
Public on Nov 21, 2008 |
| Title |
Growth of B. thetaiotaomicron on purified host mucosal glycans and glycan fragments |
| Platform organisms |
Bacteroides thetaiotaomicron; Phocaeicola vulgatus; Parabacteroides distasonis; Methanobrevibacter smithii; Lachnospira eligens; Agathobacter rectalis |
| Sample organism |
Bacteroides thetaiotaomicron |
| Experiment type |
Expression profiling by array
|
| Summary |
Bacteroides thetaiotaomicron was grown and transcriptionally profiled on a number of different host mucosal glycans and their component mono- and disaccharides.
|
| |
|
| Overall design |
Experiments are performed in biological duplicate (2 replicates per growth condition). All cultures were harvested at similar points in mid-log phase of growth in minimal medium plus 0.5% (total amount, w/v) of a defined carbon source. Cultures on individual carbon sources are designed to be referenced to a minimal medium glucose control (GSM302686 and 302791) grown in the same growth format. Note that the hybridization targets used for these two reference datasets are from the exact same prep used for similar targets on the GPL1821 platform (sets GSM301720 and 301721)
|
| |
|
| Contributor(s) |
Martens EC, Chiang H, Gordon JI |
| Citation(s) |
18996345 |
| |
| Submission date |
Jul 02, 2008 |
| Last update date |
Jan 30, 2015 |
| Contact name |
Eric Charles Martens |
| E-mail(s) |
emartens@umich.edu
|
| Phone |
734-647-5800
|
| Organization name |
University of Michigan Medical School
|
| Department |
Dept. of Microbiology and Immunology
|
| Street address |
1150 West Medical Center Drive
|
| City |
Ann Arbor |
| State/province |
MI |
| ZIP/Postal code |
48109 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL7006 |
[BacEubMsa520350F] Affymetrix Human gut microbiota community GeneChip |
|
| Samples (18)
|
| GSM302686 |
B. thetaiotaomicron responses to purified host glycans and components, minimal glucose 1 |
| GSM302791 |
B. thetaiotaomicron responses to purified host glycans and components, minimal glucose 2 |
| GSM302792 |
B. thetaiotaomicron responses to purified host glycans and components: core 1 monosaccharides 1 |
| GSM302793 |
B. thetaiotaomicron responses to purified host glycans and components: core 1 monosaccharides 2 |
| GSM302794 |
B. thetaiotaomicron responses to purified host glycans and components: core 1 disaccharide 1 |
| GSM302795 |
B. thetaiotaomicron responses to purified host glycans and components: core 1 disaccharide 2 |
| GSM302796 |
B. thetaiotaomicron responses to purified host glycans and components: LacNAc monosaccharides 1 |
| GSM302797 |
B. thetaiotaomicron responses to purified host glycans and components: LacNAc monosaccharides 2 |
| GSM302798 |
B. thetaiotaomicron responses to purified host glycans and components: LacNAc disaccharide 1 |
| GSM302799 |
B. thetaiotaomicron responses to purified host glycans and components: LacNAc disaccharide 2 |
| GSM302800 |
B. thetaiotaomicron responses to purified host glycans and components: chondroitin sulfate 1 |
| GSM302801 |
B. thetaiotaomicron responses to purified host glycans and components: chondroitin sulfate 2 |
| GSM302802 |
B. thetaiotaomicron responses to purified host glycans and components: hyaluronan 1 |
| GSM302803 |
B. thetaiotaomicron responses to purified host glycans and components: hyaluronan 2 |
| GSM302804 |
B. thetaiotaomicron responses to purified host glycans and components: heparin 1 |
| GSM302805 |
B. thetaiotaomicron responses to purified host glycans and components: heparin 2 |
| GSM302806 |
B. thetaiotaomicron responses to purified host glycans and components: alpha mannan 1 |
| GSM302807 |
B. thetaiotaomicron responses to purified host glycans and components: alpha mannan 2 |
|
| This SubSeries is part of SuperSeries: |
| GSE11980 |
Glycan effect on Saccharolytic Human Distal Gut Symbiont, B. thetaiotaomicron |
|
| Relations |
| BioProject |
PRJNA109259 |
Less...
More...