Chronic colitis in Bacteroides Thetaiotaomicron-Monoassociated HLA-B27 Transgenic rats alters expression of receptor and metabolic genes in luminal bacteria.
Regulated expression of polysaccharide utilization and capsular biosynthesis loci in biofilm and planktonic Bacteroides thetaiotaomicron during growth in chemostats
Characterizing the interactions between a naturally-primed IgA (mAb 260.8) and its conserved Bacteroides thetaiotaomicron species-specific epitope in gnotobiotic mice [array]
Characterizing the interactions between a naturally-primed IgA (mAb 260.8) and its conserved Bacteroides thetaiotaomicron species-specific epitope in gnotobiotic mice
Data table header descriptions
ID
ORF_submitted
open reading frame from noted species
ORF
locus tag
ORGANISM
source species
Description
gene description details
Sequence Type
control or species mRNA
SPOT_ID
Data table
ID
ORF_submitted
ORF
ORGANISM
Description
Sequence Type
SPOT_ID
AFFX-18SRNAMur/X00686_3_at
Mus musculus
M. musculus GEN=18S rRNA DB_XREF=gb:X00686.1 NOTE=SIF corresponding to nucleotides 1321-1821 of gb:X00686.1 DEF=Mouse gene for 18S rRNA.
Control Sequence
CONTROL
AFFX-18SRNAMur/X00686_5_at
Mus musculus
M. musculus GEN=18S rRNA DB_XREF=gb:X00686.1 NOTE=SIF corresponding to nucleotides 27-612 of gb:X00686.1 DEF=Mouse gene for 18S rRNA.
Control Sequence
CONTROL
AFFX-18SRNAMur/X00686_M_at
Mus musculus
M. musculus GEN=18S rRNA DB_XREF=gb:X00686.1 NOTE=SIF corresponding to nucleotides 755-1227 of gb:X00686.1 DEF=Mouse gene for 18S rRNA.
Control Sequence
CONTROL
AFFX-BioB-3_at
Escherichia coli
E. coli GEN=bioB DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
Control Sequence
CONTROL
AFFX-BioB-5_at
Escherichia coli
E. coli GEN=bioB DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
Control Sequence
CONTROL
AFFX-BioB-M_at
Escherichia coli
E. coli GEN=bioB DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
Control Sequence
CONTROL
AFFX-BioC-3_at
Escherichia coli
E. coli GEN=bioC DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
Control Sequence
CONTROL
AFFX-BioC-5_at
Escherichia coli
E. coli GEN=bioC DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
Control Sequence
CONTROL
AFFX-BioDn-3_at
Escherichia coli
E. coli GEN=bioD DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
Control Sequence
CONTROL
AFFX-BioDn-5_at
Escherichia coli
E. coli GEN=bioD DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
Control Sequence
CONTROL
AFFX-CreX-3_at
Bacteriophage P1
Bacteriophage P1 GEN=cre DB_XREF=gb:X03453.1 NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 DEF=Bacteriophage P1 cre gene for recombinase protein.
Control Sequence
CONTROL
AFFX-CreX-5_at
Bacteriophage P2
Bacteriophage P1 GEN=cre DB_XREF=gb:X03453.1 NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 DEF=Bacteriophage P1 cre gene for recombinase protein.
B. subtilis GEN=dapB, jojF DB_XREF=gb:L38424.1 NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1, not 100% identical DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds s.
Control Sequence
CONTROL
AFFX-GapdhMur/M32599_3_at
Mus musculus
M. musculus GEN=gapd DB_XREF=gb:M32599.1 NOTE=SIF corresponding to nucleotides 841-1153 of gb:M32599.1 DEF=Mouse glyceraldehyde-3-phosphate dehydrogenase mRNA, complete cds.
Control Sequence
CONTROL
AFFX-GapdhMur/M32599_5_at
Mus musculus
M. musculus GEN=gapd DB_XREF=gb:M32599.1 NOTE=SIF corresponding to nucleotides 90-409 of gb:M32599.1 DEF=Mouse glyceraldehyde-3-phosphate dehydrogenase mRNA, complete cds.
Control Sequence
CONTROL
AFFX-GapdhMur/M32599_M_at
Mus musculus
M. musculus GEN=gapd DB_XREF=gb:M32599.1 NOTE=SIF corresponding to nucleotides 458-812 of gb:M32599.1 DEF=Mouse glyceraldehyde-3-phosphate dehydrogenase mRNA, complete cds.
Control Sequence
CONTROL
AFFX-LysX-3_at
Bacillus subtilis
B. subtilis GEN=lys DB_XREF=gb:X17013.1 NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20).
Control Sequence
CONTROL
AFFX-LysX-5_at
Bacillus subtilis
B. subtilis GEN=lys DB_XREF=gb:X17013.1 NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20).
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