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Series GSE120135 Query DataSets for GSE120135
Status Public on Jul 01, 2019
Title Multiple genes recruited from hormone pathways partition maize diterpenoid defences.
Organism Zea mays
Experiment type Expression profiling by high throughput sequencing
Summary Duplication and divergence of primary pathway genes underlie the evolution of plant specialized metabolism; however, mechanisms partitioning parallel hormone and defence pathways are often speculative. For example, the primary pathway intermediate ent-kaurene is essential for gibberellin biosynthesis and is also a proposed precursor for maize antibiotics. By integrating transcriptional coregulation patterns, genome-wide association studies, combinatorial enzyme assays, proteomics and targeted mutant analyses, we show that maize kauralexin biosynthesis proceeds via the positional isomer ent-isokaurene formed by a diterpene synthase pair recruited from gibberellin metabolism. The oxygenation and subsequent desaturation of ent-isokaurene by three promiscuous cytochrome P450s and a new steroid 5α reductase indirectly yields predominant ent-kaurene-associated antibiotics required for Fusarium stalk rot resistance. The divergence and differential expression of pathway branches derived from multiple duplicated hormone-metabolic genes minimizes dysregulation of primary metabolism via the circuitous biosynthesis of ent-kaurene-related antibiotics without the production of growth hormone precursors during defence.
 
Overall design A total of 8 samples were analyzed, comprised of two treatments, SLB 24 h and a 0.1%Tween 20 in H20 control 24 h, all in replicates of four
 
Contributor(s) Schmitz RJ, Schmelz E
Citation(s) 31527844
Submission date Sep 18, 2018
Last update date Oct 01, 2019
Contact name Robert J Schmitz
E-mail(s) schmitz@uga.edu
Organization name University of Georgia
Department Genetics
Street address B416 Davison Life Sciences
City Athens
State/province GA
ZIP/Postal code 30602
Country USA
 
Platforms (1)
GPL20156 Illumina NextSeq 500 (Zea mays)
Samples (8)
GSM3394782 SLB 24hr leaf treatment rep1
GSM3394783 SLB 24hr leaf treatment rep2
GSM3394784 SLB 24hr leaf treatment rep3
Relations
BioProject PRJNA491716
SRA SRP162042

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE120135_RNA_column_header_descriptions.txt.gz 292 b (ftp)(http) TXT
GSE120135_RNA_maize_FPKM_value.txt.gz 712.0 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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