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Series GSE122617 Query DataSets for GSE122617
Status Public on Nov 17, 2018
Title Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Our analysis indicates that at least 37% of the transcriptome mobilized by KNAT1 is potentially dependent on this interaction, and includes genes involved in secondary cell wall modifications and phenylpropanoid biosynthesis.
Overall design Seven-day-old Arabidopsis wild-type (No-0) and 35S::KNAT1 seedlings growing in MS plates under continuous light were transferred to a liquid growing medium supplemented with 10 μM paclobutrazol (PAC) for 18 h. Seedlings were then incubated with 10 μM PAC+100 μM GA3 or maintained in 10 μM PAC for 5 h.
Contributor(s) Felipo-Benavent A, Alabadí D, Blázquez MA
Citation(s) 30389856
Submission date Nov 16, 2018
Last update date Feb 16, 2019
Contact name David Alabadi
Phone 34963877723
Organization name Instituto de Biologia Molecular y Celular de Plantas (CSIC-UPV)
Department Biologia del Desarrollo
Lab 2.08
Street address Av de los Naranjos s/n, Campus UPV, Edificio 8E
City Valencia
State/province Valencia
ZIP/Postal code 46022
Country Spain
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (12)
GSM3476309 A1: WT_PAC_rep1
GSM3476310 B1: WT_PAC_rep2
GSM3476311 C1: WT_PAC_rep3
BioProject PRJNA505783
SRA SRP169069

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE122617_Raw_data_KNAT1.txt.gz 1.3 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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