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Series GSE12519 Query DataSets for GSE12519
Status Public on Oct 31, 2008
Title The growth factor environment defines distinct pluripotent ground states in novel blastocyst derived stem cells
Organism Mus musculus
Experiment type Expression profiling by array
Summary Pluripotent stem cell lines can be derived from blastocyst embryos, which yield embryonic stem cell lines (ES cells), as well as the post-implantation epiblast, which gives rise to epiblast stem cell lines (EpiSCs). Remarkably, ES cells and EpiSCs display profound differences in the combination of growth factors that maintain their pluripotent state. Molecular and functional differences between these two stem cell types demonstrate that the tissue of origin and/or the growth factor milieu may be important determinants of the stem cell identity. We explored how developmental stage of the tissue of origin and culture growth factor conditions affect the stem cell pluripotent state. Our findings reveal that novel stem cell lines can be generated from blastocyst embryos with unique functional and molecular properties. We demonstrate that the culture growth factor environment and cell-cell interaction play a critical role in defining several unique and stable stem cell ground states.

Keywords: Clonal analysis of FAB-SC gene expression
 
Overall design Cell type characterization - 3 separate single cell clones
 
Contributor(s) Chou Y, Chen H, Eijpe M, Yabuuchi A, Chenoweth JG, Lu J, McKay RD, Geijsen N
Citation(s) 18984157
Submission date Aug 21, 2008
Last update date Mar 20, 2012
Contact name Niels Geijsen
Organization name Massachusetts General Hospital
Department Center for Regenerative Medicine
Street address 185 Cambridge St. CPZN 4-4256
City Boston
State/province MA
ZIP/Postal code 02114
Country USA
 
Platforms (1)
GPL7204 GeneSifter export of Agilent 4X44K whole mouse genome microarray
Samples (3)
GSM314554 FAB-SC1
GSM314555 FAB-SC2
GSM314556 FAB-SC3
Relations
BioProject PRJNA112917

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE12519_RAW.tar 18.2 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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