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Series GSE135778 Query DataSets for GSE135778
Status Public on Oct 07, 2020
Title Whole genome RNA-sequencing from root tips of Arabidopsis thaliana med16-2 mutant under High and Low phosphate conditions
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Total mRNA was extracted from the root tips (2-3 mm from the root apex) of wild-type plants (Col-0 accession) and med16-2 mutants grown under low and high phosphate conditions 4 days after germination, using and sequenced by RNA-seq methodology.
Overall design Analysis of 4 different treatments, 2 different genotypes (Col-0, med16-2), 2 different phosphate concentration treatments (High Pi, Low Pi), 1 biological replicate for treatment
Contributor(s) Herrera-Estrella LR, Raya-Gonzalez J, Ojeda-Rivera JO
Citation(s) 33034045
Submission date Aug 13, 2019
Last update date Jan 06, 2021
Contact name Luis Rafael Herrera-Estrella
Organization name Cinvestav - Langebio
Department Langebio
Lab Plant Physiology and Metabolic Engineering
Street address Km 9.6 Libramiento Norte Carretera León
City Irapuato
State/province Guanajuato
ZIP/Postal code 36821
Country Mexico
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (4)
GSM4029888 At Col-0 +Pi
GSM4029889 At Col-0 -Pi
GSM4029890 At med16-2 +Pi
BioProject PRJNA560045
SRA SRP218231

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE135778_RAW.tar 500.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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