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Status |
Public on Jun 05, 2020 |
Title |
Gene expression analysis by RNAseq in Fusarium graminearum WT, TRI6 mutant (∆tri6) and a mutant constitutively expressing TRI6 (∆tri6/TRI6). |
Organism |
Fusarium graminearum |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
Identifying the role of TRI6 in Fusarium graminearum isolate NRRL29169 by high-throughput RNA sequencing under two environemental conditions.
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Overall design |
F. graminearum strains (wildtype, ∆tri6, ∆tri6/TRI6) were cultured in PN medium for 24 hours (PN conditions); also cultured in PN medium for 24 hrs followed by NPN medium for 24 hrs (NPN conditions). Total RNA was extracted and sequenced using Ilumina NextSeq platform.
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Contributor(s) |
Shostak K, Subramaniam G |
Citation(s) |
32692880 |
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Submission date |
Dec 03, 2019 |
Last update date |
Sep 04, 2020 |
Contact name |
Kristina Shostak |
Organization name |
Agriculture and Agri-Food Canada
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Street address |
960 Carling Avenue
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City |
Ottawa |
ZIP/Postal code |
K1Y 4X2 |
Country |
Canada |
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Platforms (1) |
GPL27851 |
Illumina NextSeq 500 (Fusarium graminearum) |
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Samples (19)
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Relations |
BioProject |
PRJNA593192 |
SRA |
SRP234469 |