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| Status |
Public on Jun 05, 2020 |
| Title |
Gene expression analysis by RNAseq in Fusarium graminearum WT, TRI6 mutant (∆tri6) and a mutant constitutively expressing TRI6 (∆tri6/TRI6). |
| Organism |
Fusarium graminearum |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Identifying the role of TRI6 in Fusarium graminearum isolate NRRL29169 by high-throughput RNA sequencing under two environemental conditions.
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| Overall design |
F. graminearum strains (wildtype, ∆tri6, ∆tri6/TRI6) were cultured in PN medium for 24 hours (PN conditions); also cultured in PN medium for 24 hrs followed by NPN medium for 24 hrs (NPN conditions). Total RNA was extracted and sequenced using Ilumina NextSeq platform.
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| Contributor(s) |
Shostak K, Subramaniam G |
| Citation(s) |
32692880 |
| |
| Submission date |
Dec 03, 2019 |
| Last update date |
Sep 04, 2020 |
| Contact name |
Kristina Shostak |
| Organization name |
Agriculture and Agri-Food Canada
|
| Street address |
960 Carling Avenue
|
| City |
Ottawa |
| ZIP/Postal code |
K1Y 4X2 |
| Country |
Canada |
| |
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| Platforms (1) |
| GPL27851 |
Illumina NextSeq 500 (Fusarium graminearum) |
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| Samples (19)
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| Relations |
| BioProject |
PRJNA593192 |
| SRA |
SRP234469 |
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