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| Status |
Public on Feb 10, 2022 |
| Title |
Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Detached Arabidopsis leaves can regenerate adventitious roots, providing a platform to study de novo root regeneration (DNRR). We performed time-lapse RNA-seq within 5 d revealed activation of gene networks in cell fate transition.
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| Overall design |
We used the adventitious rooting assay from detached Arabidopsis leaves in this study. We performed time-lapse RNA-seq analysis of the wounded region of leaf explants at t0, 6 h, 12 h, 1 d, 2 d, 3 d, 4 d, and 5 d after detachment to study the gene networks in cell fate transition.
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| Contributor(s) |
Xu L, Liu W, Zhang Y |
| Citation(s) |
35605192 |
| Submission date |
Mar 20, 2020 |
| Last update date |
Jul 20, 2022 |
| Contact name |
Lin XU |
| E-mail(s) |
xulin01@sibs.ac.cn
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| Phone |
86-21-54924101
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| Organization name |
Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences
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| Department |
Chinese Academy of Sciences
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| Street address |
300 Fenglin Road
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| City |
Shanghai |
| ZIP/Postal code |
200032 |
| Country |
China |
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| Platforms (1) |
| GPL26208 |
Illumina NovaSeq 6000 (Arabidopsis thaliana) |
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| Samples (30)
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| Relations |
| BioProject |
PRJNA613690 |
| SRA |
SRP253504 |
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