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Series GSE147501 Query DataSets for GSE147501
Status Public on Jul 17, 2020
Title Genetic analysis of the modern Australian labradoodle dog breed reveals strong selection for poodle traits
Organism Canis lupus familiaris
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary Allele frequency analysis reveals that the breed is enhanced for genes controlling traits associated with the poodle-type coat, which are perceived to have an association with hypoallergenicity, with no strong signatures of selection for Labrador retriever (LAB) traits. This study provides a blueprint for understanding how dog breeds are formed, highlighting the limited scope of trait selection in defining seemingly new breeds.
 
Overall design 47 canid samples representing 3 breeds
 
Contributor(s) Ali MB, Evans JM, Parker HG, Kim J, Pearce-Kelling S, Whitaker DT, Plassais J, Khan QM, Ostrander EA
Citation(s) 32911491
Submission date Mar 24, 2020
Last update date Sep 08, 2022
Contact name Alexander Christian Harris
E-mail(s) alex.harris@nih.gov
Phone 301-402-2016
Organization name National Institutes of Health
Department National Human Genome Research Institute
Lab Ostrander
Street address 50 South Drive
City Bethesda
State/province Maryland
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL17481 Illumina CanineHD BeadChip
Samples (47)
GSM4432297 ALBD: Labradoodle8
GSM4432298 ALBD: Labradoodle6
GSM4432299 ALBD: Labradoodle17
Relations
BioProject PRJNA615393

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE147501_GEO_Ali_032320_DetailedGenotypeCalls.txt.gz 98.0 Mb (ftp)(http) TXT
GSE147501_GEO_Ali_032320_Intensities.txt.gz 105.8 Mb (ftp)(http) TXT
GSE147501_GEO_Ali_032320_MatrixProcessed.txt.gz 132.9 Mb (ftp)(http) TXT
GSE147501_RAW.tar 124.5 Mb (http)(custom) TAR (of IDAT)
Processed data are available on Series record

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