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Series GSE152288 Query DataSets for GSE152288
Status Public on Jun 12, 2020
Title Affymetrix CytoScan 750K data for validation of the BoBs/CNV-seq comparison study
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary BACs-on-Beads (BoBs) assay and Copy Number Variation Sequencing (CNV-Seq) are two frequently used methods in today’s prenatal diagnosis. Several researches studies were conducted to investigate the performance of each approach, but they were never compared side by side. This dataset is intended to be used as the 'gold standard dataset' for the validation of BoBs/CNV-seq test reasults on 10 amniotic fluid samples with pathogenic fetal CNVs.
 
Overall design CNV analysis using Affymetrix 750K was performed on 10 samples to validate the results generated by BoBs assay and CNV-seq.
 
Contributor(s) Xu L, Chen C
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Submission date Jun 11, 2020
Last update date Jun 14, 2020
Contact name Hailong Huang
Organization name Fujian Maternity and Child Health Hospital
Street address No.18 Daoshan Road, Gulou District
City Fuzhou
State/province Fujian
ZIP/Postal code 350001
Country China
 
Platforms (1)
GPL18637 [CytoScan750K_Array] Affymetrix CytoScan 750K Array
Samples (10)
GSM4610644 amniotic fluid B16
GSM4610645 amniotic fluid E1960
GSM4610646 amniotic fluid E2860
Relations
BioProject PRJNA638907

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE152288_RAW.tar 551.0 Mb (http)(custom) TAR (of CEL, CYCHP)
Processed data provided as supplementary file

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