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Series GSE154372 Query DataSets for GSE154372
Status Public on Aug 17, 2020
Title Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from the Phyllanthus genus (Phyllanthaceae) from New Caledonia.
Organisms [Phyllanthus] conjugatus var. ducosensis; Phyllanthus luciliae
Experiment type Expression profiling by high throughput sequencing
Summary The leaf transcriptome of the nickel hyperaccumulator Phyllanthus luciliae (Phyllanthaceae) endemic from New Caledonia was compared to the related non-accumulator Phyllanthus conjugatus var. ducosensis, living respectively on ultramafic and sedimentary soil, to identity differentially expressed genes potentially involved in Ni hyperaccumulation.
 
Overall design Leaves from 3 independant individual plants of Phyllanthus lucilia and Phyllanthus conjugatus were collected in their natural environment. RNA of the 6 independant samples were extracted and sequenced using the Illumina paired-end sequencing technology.
 
Contributor(s) Garcia de la Torre VS, Majorel-Loulergue C, Launay-Avon A, Burtet-Sarramegna V, Fogliani B, Merlot S
Citation(s)
  • García de la Torre VS, Majorel-Loulergue C, Rigaill GJ, Alfonso-González D et al. Wide cross-species RNA-Seq comparison reveals convergent molecular mechanisms involved in nickel hyperaccumulation across dicotyledons. New Phytol 2021 Jan;229(2):994-1006. PMID: 32583438
Submission date Jul 13, 2020
Last update date Feb 18, 2022
Contact name Sylvain MERLOT
E-mail(s) sylvain.merlot@univ-tlse3.fr, sylvain.merlot@cnrs.fr
Organization name CNRS
Department Biological Sciences
Lab LRSV
Street address 24, chemin de Borde Rouge
City Auzeville Tolosane
ZIP/Postal code 31320
Country France
 
Platforms (2)
GPL28860 Illumina HiSeq 2000 (Phyllanthus luciliae)
GPL28861 Illumina HiSeq 2000 (Phyllanthus conjugatus var. ducosensis)
Samples (6)
GSM4669817 Phlu_ENV_F1
GSM4669818 Phlu_ENV_F2
GSM4669819 Phlu_ENV_F3
This SubSeries is part of SuperSeries:
GSE116054 Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from diverse genera and geographic locations
Relations
BioProject PRJNA645979
SRA SRP271679

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE154372_Phco_transcriptome_v1.fasta.gz 11.0 Mb (ftp)(http) FASTA
GSE154372_Phlu_transcriptome_v1.fasta.gz 10.4 Mb (ftp)(http) FASTA
GSE154372_RAW.tar 1.0 Mb (http)(custom) TAR (of CSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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