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Series GSE159050 Query DataSets for GSE159050
Status Public on Mar 04, 2022
Title Developmental series of tomato lateral root development
Organism Solanum lycopersicum
Experiment type Expression profiling by high throughput sequencing
Summary The purpose of this dataset is to generate a transcriptomic series of staged non-induced lateral root intiation in M82 tomato. Sections of the primary roots containing lateral roots at 5 different developemental stages (staged by their anatomy and expression of the auxin response marker DR5) were collected.
 
Overall design Experiment was performed in duplicates. A section of the primary root containing no lateral roots was used as control
 
Contributor(s) Omary M, Gil N, Steiner E, Yahav C, Efroni I
Citation(s) 35239373
Submission date Oct 05, 2020
Last update date Mar 04, 2022
Contact name Idan Efroni
E-mail(s) idan.efroni@mail.huji.ac.il
Organization name Hebrew University
Department Plant Sciences
Street address POB 12
City Rehovot
ZIP/Postal code 76100
Country Israel
 
Platforms (1)
GPL21762 Illumina NextSeq 500 (Solanum lycopersicum)
Samples (12)
GSM4818228 LR-0-Rep1
GSM4818229 LR-1-Rep1
GSM4818230 LR-2-Rep1
Relations
BioProject PRJNA667478
SRA SRP286422

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE159050_Sl_LR_Data.csv.gz 518.4 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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