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Status |
Public on Aug 05, 2021 |
Title |
Expression profiling of E. coli in three media treated with antibiotics |
Organism |
Escherichia coli str. K-12 substr. MG1655 |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
RNA sequencing was performed on E. coli K12 MG1655 on three media (M9, CA-MHB, R10LB) treated with four antibiotics (Ciprofloxacin, Trimethoprim-sulfamethoxazole, Ceftriaxone, Meropenem) at their media-specific MIC90s
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Overall design |
E. coli was grown to mid-log phase and treated with antibiotics for 30 min with shaking. Total RNA was sampled from independent duplicate cultures
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Contributor(s) |
Sastry AV, Dillon N, Szubin R, Hefner Y, Xu S, Palsson BO |
Citation(s) |
34431696 |
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Submission date |
Oct 13, 2020 |
Last update date |
Sep 14, 2021 |
Contact name |
Anand Sastry |
E-mail(s) |
avsastry@eng.ucsd.edu
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Organization name |
University of California, San Diego
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Department |
Bioengineering
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Lab |
Systems Biology Research Group
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Street address |
9500 Gilman Dr
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City |
San Diego |
State/province |
CA |
ZIP/Postal code |
92093 |
Country |
USA |
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Platforms (1) |
GPL21117 |
Illumina NextSeq 500 (Escherichia coli str. K-12 substr. MG1655) |
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Samples (30)
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Relations |
BioProject |
PRJNA669053 |
SRA |
SRP287299 |