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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 09, 2015 |
| Title |
Illumina NextSeq 500 (Escherichia coli str. K-12 substr. MG1655) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Escherichia coli str. K-12 substr. MG1655 |
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| Submission date |
Nov 09, 2015 |
| Last update date |
Nov 09, 2015 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (669)
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GSM1936193, GSM1936194, GSM1936195, GSM1936196, GSM1936197, GSM1936198
GSM2190886, GSM2190887, GSM2190888, GSM2190889, GSM2190890, GSM2190891, GSM2190892, GSM2190893, GSM2190894, GSM2190895, GSM2190896, GSM2190897, GSM2190898, GSM2190899, GSM2190900, GSM2190901, GSM2190902, GSM2190903, GSM2267479, GSM2267480, GSM2267481, GSM2267482, GSM2267483, GSM2267484, GSM2844112, GSM2844113, GSM2844114, GSM2844115, GSM2870407, GSM2870410, GSM2870412, GSM2870413, GSM2870414, GSM2870415, GSM2870416, GSM2870417, GSM2870418, GSM2870419, GSM2870420, GSM2870421, GSM2870422, GSM2870423, GSM2870424, GSM2870425, GSM2870426, GSM2870427, GSM2870428, GSM2870429, GSM2870430, GSM2870431, GSM2870432, GSM2870433, GSM2870434, GSM2870435, GSM2870436, GSM2870437, GSM2870438, GSM2870439, GSM2870440, GSM2870441, GSM2971253, GSM2971254, GSM3019236, GSM3019240, GSM3019241, GSM3019243, GSM3019245, GSM3019246, GSM3072491, GSM3072492, GSM3072493, GSM3072494, GSM3072495, GSM3072496, GSM3072497, GSM3072498, GSM3415066, GSM3415067, GSM3415068, GSM3415069, GSM3415070, GSM3415071, GSM3415072, GSM3415073, GSM3415074, GSM3415075, GSM3415076, GSM3415077, GSM3415078, GSM3415079, GSM3415080, GSM3415081, GSM3415082, GSM3415083, GSM3415084, GSM3415085, GSM3415086, GSM3415087, GSM3415088, GSM3415089, GSM3415090, GSM3415091, GSM3415092, GSM3415093, GSM3415094, GSM3415095, GSM3415096, GSM3415097, GSM3415098, GSM3415099, GSM3415100, GSM3415101, GSM3415102, GSM3415103, GSM3415104, GSM3415105, GSM3415106, GSM3415107, GSM3415108, GSM3415109, GSM3415110, GSM3415111, GSM3415112, GSM3415113, GSM3415114, GSM3415115, GSM3415116, GSM3415117, GSM3415118, GSM3415119, GSM3415120, GSM3415121, GSM3415564, GSM3415565, GSM3415566, GSM3415567, GSM3415568, GSM3415569, GSM3415570, GSM3415571, GSM3415572, GSM3415573, GSM3415574, GSM3415575, GSM3415576, GSM3415577, GSM3415578, GSM3415579, GSM3415580, GSM3415581, GSM3415582, GSM3415583, GSM3415584, GSM3415585, GSM3415586, GSM3415587, GSM3415588, GSM3415589, GSM3415590, GSM3415591, GSM3415592, GSM3415593, GSM3415594, GSM3415595, GSM3415596, GSM3415597, GSM3415598, GSM3415599, GSM3415600, GSM3415601, GSM3415602, GSM3415603, GSM3415604, GSM3415605, GSM3415606, GSM3415607, GSM3415608, GSM3415609, GSM3415610, GSM3415611, GSM3415612, GSM3415613, GSM3415614, GSM3415615, GSM3415616, GSM3415617, GSM3415618, GSM3487541, GSM3487542, GSM3487543, GSM3487544, GSM3487545, GSM3487546, GSM3681071, GSM3681072, GSM3681073, GSM3681074, GSM3681075, GSM3681076, GSM3681077, GSM3681078, GSM3681079, GSM3681080, GSM3681081, GSM3681082, GSM3681083, GSM3681084, GSM3681085, GSM3681086, GSM3681087, GSM3681088, GSM3681089, GSM3681090, GSM3783656, GSM3783657, GSM3783658, GSM4151084, GSM4292420, GSM4292421, GSM4292422, GSM4292423, GSM4292424, GSM4292425, GSM4292426, GSM4292427, GSM4292428, GSM4292429, GSM4292430, GSM4292431, GSM4292432, GSM4292433, GSM4292434, GSM4292435, GSM4292436, GSM4292437, GSM4292438, GSM4292439, GSM4292440, GSM4292441, GSM4292442, GSM4292443, GSM4292444, GSM4292445, GSM4292446, GSM4292447, GSM4292448, GSM4292449, GSM4292450, GSM4292451, GSM4508563, GSM4508564, GSM4508565, GSM4508566, GSM4508567, GSM4508568, GSM4508569, GSM4508570, GSM4508571, GSM4508572, GSM4508573, GSM4508574, GSM4508575, GSM4508576, GSM4508577, GSM4508578, GSM4508579, GSM4508580, GSM4508581, GSM4508582, GSM4508583, GSM4508584, GSM4508585, GSM4508586, GSM4508587, GSM4508588, GSM4508589, GSM4508590, GSM4628309, GSM4628310, GSM4628311, GSM4628312, GSM4628313, GSM4628314, GSM4628315, GSM4831006, GSM4831007, GSM4831008, GSM4831009, GSM4831010, GSM4831011, GSM4831012, GSM4831013, GSM4831014, GSM4831015, GSM4831016, GSM4831017, GSM4831018, GSM4831019, GSM4831020, GSM4831021, GSM4831022, GSM4831023, GSM4831024, GSM4831025, GSM4831026, GSM4831027, GSM4831028, GSM4831029, GSM4831030, GSM4831031, GSM4831032, GSM4831033, GSM4831034, GSM4831035, GSM4914072, GSM4914073, GSM4914074, GSM4914075, GSM4914076, GSM4914077, GSM4914078, GSM4914079, GSM4914080, GSM4914081, GSM4914082, GSM4914083, GSM4914084, GSM4914085, GSM4914086, GSM4914087, GSM4914088, GSM4914089, GSM4914090, GSM4914091, GSM4914092, GSM4914093, GSM4914094, GSM4914095, GSM4914096, GSM4914097, GSM4914098, GSM4914099, GSM4914549, GSM4914550, GSM4914551, GSM4914552, GSM4914553, GSM4914554, GSM4914555, GSM4914556, GSM4914557, GSM4914558, GSM4914559, GSM4914560, GSM4914561, GSM4914562, GSM4914563, GSM4914564, GSM4914565, GSM4914566, GSM4914567, GSM4914568, GSM4914569, GSM4914570, GSM4914571, GSM4914572, GSM4914573, GSM4914574, GSM4914575, GSM4914576, GSM4914577, GSM4914578, GSM4914579, GSM4914580, GSM4914581, GSM4914582, GSM4914583, GSM4914584, GSM4914585, GSM4914586, GSM4914587, GSM4914588, GSM4914589, GSM4914590, GSM4914591, GSM4914592, GSM4914593, GSM4914594, GSM4914595, GSM4914596, GSM4989042, GSM4989043, GSM5024430, GSM5024431, GSM5024432, GSM5024433, GSM5024434, GSM5024435, GSM5024436, GSM5024437, GSM5024438, GSM5024439, GSM5024440, GSM5024441, GSM5024442, GSM5024443, GSM5024444, GSM5024445, GSM5024446, GSM5024447, GSM5024448, GSM5024449, GSM5024450, GSM5024451, GSM5024452, GSM5024453, GSM5060699, GSM5060700, GSM5060701, GSM5060702, GSM5239085, GSM5239086, GSM5239087, GSM5239088, GSM5239089, GSM5239090, GSM5239091, GSM5239092, GSM5239093, GSM5239094, GSM5239095, GSM5239096, GSM5239097, GSM5239098, GSM5239099, GSM5239100, GSM5239101, GSM5239102, GSM5239103, GSM5239104, GSM5239105, GSM5239106, GSM5239107, GSM5239108, GSM5239109, GSM5239110, GSM5239111, GSM5239112, GSM5239113, GSM5239114, GSM5239115, GSM5239116, GSM5239117, GSM5239118, GSM5239119, GSM5239120, GSM5239121, GSM5239122, GSM5239123, GSM5239124, GSM5239125, GSM5239126, GSM5239127, GSM5239128, GSM5239129, GSM5239130, GSM5239131, GSM5239132, GSM5239133, GSM5239134, GSM5239135, GSM5239136, GSM5239137, GSM5239138, GSM5239139, GSM5239140, GSM5239141, GSM5239142, GSM5239143, GSM5239144, GSM5353510, GSM5353512, GSM5436903, GSM5436904, GSM5436905, GSM5436906, GSM5961621, GSM5961622, GSM5961623, GSM5961624, GSM5961625, GSM5961626, GSM6033849, GSM6033850...
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| Series (50)
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| GSE74836 |
Sigma38 binding sites in E. Coli |
| GSE82343 |
Modulation of global transcriptional regulatory networks as a strategy for increasing kanamycin resistance of EF-G mutants |
| GSE85472 |
E. coli K-12 MG1655 Transcriptome Quantification |
| GSE95211 |
Evolutionary Convergence of Pathway-specific Enzyme Expression Stoichiometry |
| GSE106633 |
Global maps of ProQ binding in vivo reveal target recognition via RNA structure and stability control at mRNA 3' ends |
| GSE107301 |
Multiscale structuring of the E. coli chromosome by nucleoid-associated and condensin proteins |
| GSE110946 |
CRISPR/dCas-based modulation of bacterial IS-transposition |
| GSE112545 |
Medium chain unsaturated fatty acid ethyl esters inhibit persister formation of Escherichia coli via antitoxin HipB |
| GSE120780 |
Engineering orthogonal signaling pathways reveals the sparse distribtion of protein protein interactions in sequence space [degenerate_library_sort_seq] |
| GSE120786 |
Engineering orthogonal signaling pathways reveals the sparse distribtion of protein protein interactions in sequence space [combinatorial_library_sort_seq] |
| GSE120789 |
Engineering orthogonal signaling pathways reveals the sparse distribtion of protein protein interactions in sequence space |
| GSE122870 |
Translation complex profiling for bacteria [Ribo-seq] |
| GSE128611 |
Engineering orthogonal signaling pathways reveals the sparse distribtion of protein protein interactions in sequence space [RNA-seq] |
| GSE131514 |
RiboReport - Benchmarking ribosome profiling based identification of open reading frames in bacteria. |
| GSE139983 |
From coarse to fine: The absolute Escherichia coli proteome under diverse growth conditions |
| GSE142291 |
Dynamic landscape of protein occupancy across the Escherichia coli chromosome |
| GSE144621 |
Genome-wide Functional Characterization of Escherichia coli Promoters and Sequence Elements Encoding Their Regulation |
| GSE149666 |
Efficient and cost-effective bacterial mRNA sequencing from low input samples through ribosomal RNA depletion |
| GSE152879 |
High-resolution, genome-wide mapping of positive supercoiling in chromosomes [RNA-seq] |
| GSE152880 |
High-resolution, genome-wide mapping of positive supercoiling in chromosomes [ecChIP] |
| GSE152882 |
High-resolution, genome-wide mapping of positive supercoiling in chromosomes |
| GSE159494 |
Expression profiling of E. coli in three media treated with antibiotics |
| GSE161754 |
Shutoff of host transcription triggers a toxin-antitoxin system to cleave phage RNA and abort infection [toxIN_riftreatment_RNAseq] |
| GSE161755 |
Shutoff of host transcription triggers a toxin-antitoxin system to cleave phage RNA and abort infection [toxN_overexpression_RNAseq] |
| GSE161756 |
Shutoff of host transcription triggers a toxin-antitoxin system to cleave phage RNA and abort infection |
| GSE161794 |
Shutoff of host transcription triggers a toxin-antitoxin system to cleave phage RNA and abort infection [toxIN_T4infection_RNAseq] |
| GSE161795 |
Shutoff of host transcription triggers a toxin-antitoxin system to cleave phage RNA and abort infection [toxIN_T7infection_RNAseq] |
| GSE165008 |
Transcriptome profile of Escherichia coli K12 MG1655 cells lacking selected genes |
| GSE165009 |
Transcriptome profile of Escherichia coli K12 MG1655 Hpx- cells |
| GSE165118 |
Transcriptome profile of Escherichia coli K12 MG1655 under Rtc-inducing conditions |
| GSE166046 |
Transcriptomic analysis of an E. coli deletion mutant of the two C-terminal OB fold domains of r-protein S1 |
| GSE171969 |
Pervasive transcription-coupled DNA repair in E. coli [CPD-seq] |
| GSE171970 |
Pervasive transcription-coupled DNA repair in E. coli [RNA-seq 1] |
| GSE171971 |
Pervasive transcription-coupled DNA repair in E. coli [RNA-seq 2] |
| GSE171972 |
Pervasive transcription-coupled DNA repair in E. coli |
| GSE179913 |
A target expression threshold dictates invader defense and autoimmunity by CRISPR-Cas13 [Genome wide screen] |
| GSE179915 |
A target expression threshold dictates invader defense and autoimmunity by CRISPR-Cas13 |
| GSE198953 |
CLIP-seq of E. coli YhgF |
| GSE200448 |
Deep sequencing and fitness calculation for plasmids carrying the CREATE cassette from the enriched tolerant strains under different pressures by using Illumina protocol |
| GSE200758 |
RNA sequencing unveils very small RNAs with potential regulatory functions in bacteria |
| GSE214511 |
The environmentally-regulated interplay between three-dimensional chromatin organisation and transcription of the Escherichia coli proVWX operon |
| GSE214856 |
Differential roles of positive and negative supercoiling in organizing the E. coli genome |
| GSE217569 |
RNA interactome capture in E. coli to identify RNA-binding proteins |
| GSE224989 |
Adaptive laboratory evolution with heterologous pgi |
| GSE249682 |
SOS Genes Are Rapidly Induced While Mutagenesis Is Temporally Regulated by Changes in Protein Activation and Nucleotide Pools After a Sub-lethal Dose of Ciprofloxacin in Escherichia coli |
| GSE270160 |
De novo gene synthesis by an antiviral reverse transcriptase [cDIP-seq] |
| GSE270161 |
De novo gene synthesis by an antiviral reverse transcriptase [RIP-seq] |
| GSE270162 |
De novo gene synthesis by an antiviral reverse transcriptase [RNA-seq] |
| GSE270164 |
De novo gene synthesis by an antiviral reverse transcriptase |
| GSE270401 |
Ribosome collisions trigger subunit splitting in E. coli |
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| Supplementary data files not provided |
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