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Series GSE160049 Query DataSets for GSE160049
Status Public on May 04, 2021
Title The embryonic ontogeny of the gonadal somatic cells in mice and monkeys [sc3seq]
Organisms Macaca fascicularis; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary In the early fetal stage, the gonads are bipotent and only later become the ovary or testis, depending on the genetic sex. Despite many studies examining how sex determination occurs from biopotential gonads, the spatial and temporal organization of bipotential gonads and their progenitors is poorly understood. Here, using lineage tracing in mice, we find that the gonads originate from a T+ primitive streak through WT1+ posterior intermediate mesoderm and appear to share origins anteriorly with the adrenal glands and posteriorly with the metanephric mesenchyme. Comparative single cell transcriptomic analyses in mouse and cynomolgus monkey embryos reveals the convergence of the lineage trajectory and genetic programs accompanying the specification of biopotential gonadal progenitor cells. This process involves sustained expression of epithelial genes and upregulation of mesenchymal genes, thereby conferring a unique epithelial/mesenchymal hybrid state. Our study provides key resources for understanding early gonadogenesis in mice and primates.
 
Overall design Single cell transcriptome analysis of mouse and cynomolgus monkey embryo using SC3-seq technology.
 
Contributor(s) Sasaki K, Oguchi A, Cheng K, Murakawa Y, Okamoto I, Ohta H, Yabuta Y, Iwatani C, Tsuchiya H, Yamamoto T, Seita Y, Saitou M
Citation(s) 33951437
Submission date Oct 25, 2020
Last update date May 17, 2021
Contact name Yukihiro Yabuta
E-mail(s) yabyab@anat2.med.kyoto-u.ac.jp
Organization name Kyoto University, Graduate school of medicine
Department Anatomy and Cell Biology
Street address Yoshida-Konoe-cho, Sakyo-ku
City Kyoto
State/province Kyoto
ZIP/Postal code 606-8501
Country Japan
 
Platforms (2)
GPL19057 Illumina NextSeq 500 (Mus musculus)
GPL22523 Illumina NextSeq 500 (Macaca fascicularis)
Samples (152)
GSM4859133 E10.5_MS155_10
GSM4859134 E10.5_MS155_9
GSM4859135 E10.5_MS134_82
This SubSeries is part of SuperSeries:
GSE160050 The embryonic ontogeny of the gonadal somatic cells in mice and monkeys
Relations
BioProject PRJNA671768
SRA SRP288641

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE160049_RAW.tar 77.2 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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