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| Status |
Public on Sep 15, 2021 |
| Title |
Plant DNA methylation sensitive to parent seed N content and mediated the influence of external nitrogen on OsNAR2.1 overexpression rice growth |
| Organism |
Oryza sativa |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
DNA methylation is an important mechanism of plant epigenomes regulated environment stress. Nitrogen (N) resource is a significant limiting factor for plant growth and productivity in both natural and agricultural systems. Here, we use Whole Genome Bisulfite Sequencing (WGBS) study genome-wide methylation influence by seed N content
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| |
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| Overall design |
Comparison of WYG7 and overexpression of OsNAR2.1 line (Ox1) rice with HN and LN seed N content in HN and NN field
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| |
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| Contributor(s) |
Fan X, Chen J, Zhang Y, Qian K, Xie P, Xu M, Hu Z, Yan K, Xu G, Fan X |
| Citation(s) |
33975546 |
| |
| Submission date |
Nov 05, 2020 |
| Last update date |
Sep 15, 2021 |
| Contact name |
Xiaorong Fan |
| E-mail(s) |
xiaorongfan@njau.edu.cn
|
| Organization name |
Nanjing Agricultural University
|
| Street address |
Tongwei Road 1
|
| City |
Nanjing, Jiangshu Province |
| State/province |
Jiangshu |
| ZIP/Postal code |
210095 |
| Country |
China |
| |
|
| Platforms (2) |
| GPL13160 |
Illumina HiSeq 2000 (Oryza sativa) |
| GPL23013 |
Illumina HiSeq 4000 (Oryza sativa) |
|
| Samples (8)
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| Relations |
| BioProject |
PRJNA674776 |
| SRA |
SRP291273 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE160884_0N0N82_0NHN82_dmr_zone.bed.gz |
158.2 Kb |
(ftp)(http) |
BED |
| GSE160884_0N0N82_0NHN82_gene_intersect_dmr.bed.gz |
91.8 Kb |
(ftp)(http) |
BED |
| GSE160884_0N0NWT_0NHNWT_dmr_zone.bed.gz |
210.4 Kb |
(ftp)(http) |
BED |
| GSE160884_0N0NWT_0NHNWT_gene_intersect_dmr.bed.gz |
126.8 Kb |
(ftp)(http) |
BED |
| GSE160884_HN0N82_HNHN82_dmr_zone.bed.gz |
203.7 Kb |
(ftp)(http) |
BED |
| GSE160884_HN0N82_HNHN82_gene_intersect_dmr.bed.gz |
122.1 Kb |
(ftp)(http) |
BED |
| GSE160884_HN0NWT_HNHNWT_dmr_zone.bed.gz |
229.4 Kb |
(ftp)(http) |
BED |
| GSE160884_HN0NWT_HNHNWT_gene_intersect_dmr.bed.gz |
124.3 Kb |
(ftp)(http) |
BED |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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