GEO Accession viewer

GSE42410	Plants regenerated from tissue culture contain stable epigenome changes in rice
GSE43727	Identification of transcriptome SNPs for assessing allele specific gene expression within a super-hybrid rice Xieyou9308
GSE44898	Imprinted expression of genes and small RNA is triggered by localized demethylation of the maternal genome in rice endosperm
GSE50755	The CentO satellite confers translational and rotational phasing on cenH3 nucleosomes in rice centromeres
GSE50778	Control of agricultural traits by hc-siRNA associated MITEs in rice
GSE51468	Small RNAs as important regulators for the hybrid vigour of super-hybrid rice
GSE52394	Illumina Solexa Digital Gene Expression Sequencing Facilitates Quantitative Analysis of Wild Type (Kasa-1) and OsMYB103L overexpression transgenic rice plant (Y103-1). Transcriptomes
GSE54274	Exploring the mechanism of C4 photosynthetic differentiation through a unified comparative analysis of maize and rice leaf transcriptomes
GSE55234	Global expression profiles of the wild-type and overexpression of OsNMD3ΔNLS transgenic plants
GSE57062	Improved tagmentation-based whole genome bisulfite sequencing for input DNA from less than 100 cells
GSE57706	Genome-wide maps of DNA methylation state in rice embryo and endosperm
GSE57950	Molecular dissection of drought tolerance mechanisms in rice by comparative deep transcriptome sequencing
GSE60288	Single-base resolution DNA methylation maps of rice cultivars under control and stress conditions
GSE62488	Comparative transcriptome profiling of a rice line carrying Xa39 and its parents triggered by Xanthomonas oryzae pv. oryzae provides novel insights into the broad-spectrum hypersensitive response
GSE62550	The Polycomb Group Gene EMF2B modulates protein coding and non-coding RNAs in developing rice panicles.
GSE62911	The gene expression kinetics reveals a key role of jasmonic acid in rice disease resistance to Magnaporthe
GSE64651	Small RNAs in stress-related rice cultivars
GSE64665	Conserved Molecular Program for Root Development in Diverse Plants
GSE65377	RNA-seq analysis of rice leaves, nodes and stems
GSE66609	MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors [miRNA-Seq]
GSE66610	MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors [degradome]
GSE66611	MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors
GSE67373	A global profiling of gene expression in chilling stress in rice
GSE69426	High-resolution mapping of H4K16 and H3K23 acetylation reveals conserved and unique distribution patterns and functions in Arabidopsis and rice
GSE70093	Differential gene expression in developing grains of two tropical indica rice genotypes differing in grain iron concentration through RNA-seq
GSE72694	miR396-OsGRF6 module controls rice inflorescence architecture
GSE73609	Rice gene expression in irrigated and rainfed fields during two seasons
GSE74497	Integrative analysis of microRNAome and transcriptome elucidates the response of susceptible rice plants to rice stripe virus RSV (RNA-Seq)
GSE74498	Integrative analysis of microRNAome and transcriptome elucidates the response of susceptible rice plants to rice stripe virus RSV (miRNA-Seq)
GSE74499	Integrative analysis of microRNAome and transcriptome elucidates the response of susceptible rice plants to rice stripe virus RSV
GSE74793	Rice gene expression in heat stress and dehydration stress - time series
GSE75794	Nucleosome free chromatin measured by ATAC-seq in Rice leaves (Oryza sativa)
GSE77046	Small RNA analysis of ASR5 knockdown rice plants (ssp. Japonica cv. Nipponbare) under Al stress conditions
GSE77300	A Widespread Impact on Small RNAs and Gene Networks in Rice msp1/ostdl1a Mutants, Partners with Key Roles in Anther Development
GSE77710	Both maternally and paternally imprinted genes regulate seed development in rice
GSE78883	A Domestication-Selected Retrotransposon for Quenching Genomic Immunity in Rice [RNA-Seq]
GSE78900	A Domestication-Selected Retrotransposon for Quenching Genomic Immunity in Rice [small RNA-Seq]
GSE78903	A Domestication-Selected Retrotransposon for Quenching Genomic Immunity in Rice
GSE78972	Hd3a, RFT1 and Ehd1 integrate photoperiodic and drought stress signals to delay the floral transition in rice
GSE79011	Transcriptome profile of rice genotypes IR24 and IRBB67 in interaction with Xanthomonas oryzae pv. oryzae under two temperature regimes
GSE79154	A Domestication-Selected Retrotransposon for Quenching Genomic Immunity in Rice [Bisulfite-seq]
GSE79155	A Domestication-Selected Retrotransposon for Quenching Genomic Immunity in Rice [MeDIP-seq]
GSE80986	The regulatory network of OsNAC6 targets drought-related genes orchestrating rice drought tolerance
GSE81069	The regulatory network of OsNAC6 targets drought-related genes orchestrating rice drought tolerance (RNA-Seq)
GSE83219	DUAL RNASeq ANALYSIS REVEALS AN INCREASE OF FUNGAL PATHOGENICITY FUNCTIONS AND A ROLE OF PLANT GLUTAMINE SYNTHETASE IN NITROGEN-INDUCED SUSCEPTIBILITY TO THE RICE BLAST FUNGUS
GSE83522	Epigenetic regulation of antagonistic receptors confers rice blast resistance with yield balance
GSE84800	Molecular basis of drought-induced susceptibility to the rice blast fungus Magnaporthe oryzae
GSE85516	Diversification of Root Hair Development Genes in Vascular Plants
GSE89494	Whole genome transcriptional responses to aluminum stress in rice roots
GSE90493	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice
GSE92549	Identification and analysis of brown planthopper-responsive microRNAs in the resistant and susceptible rice plants
GSE92989	An RNA-Seq transcriptome analysis of rice genes in response to soil-water deficiencies and the identification of OsPhyB-mediating novel regulatory pathway for drought tolerance in root
GSE93287	The Roc10, a Rice Homeodomain-leucine Zipper Transcription Factor, Modulates Lignin Biosynthesis that Confers Drought Tolerance [RNA-seq]
GSE93288	The Roc10, a Rice Homeodomain-leucine Zipper Transcription Factor, Modulates Lignin Biosynthesis that Confers Drought Tolerance [ChIP-seq]
GSE93289	The Roc10, a Rice Homeodomain-leucine Zipper Transcription Factor, Modulates Lignin Biosynthesis that Confers Drought Tolerance
GSE94319	A genome-wide survey of DNA methylation in OsNAR2.1 transgenic plants
GSE95107	DNA demethylation activates genes in seed maternal integument development in rice (Oryza sativa L.)
GSE95200	RNA-seq analysis of genes regulated by S5 at different development stages
GSE101482	ATAC-seq profiling of open chromatin in the root tips of four plant species (Arabidopsis thaliana, Medicago truncatula, Solanum lycopersicum, and Oryza sativa) and two Arabidopsis thaliana cell types (root hair and non-hair epidermal cells)
GSE101998	Profiling of small RNA populations in uninucleate microspores and bicellular pollen of rice
GSE103300	Analysis of Genes with Alternatively Spliced Transcripts in the Leaf, Root, Panicle and Seed of Rice using RNA Sequencing
GSE104035	Transcriptomic analysis of gibberellic acid and paclobutrazol treated rice seedlings under submergence
GSE104928	Transcriptome analysis reveals important alkali-responsive genes and key pathways in rice under alkaline stress
GSE106954	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and OsAFB6 overexpression mutant Transcriptomes
GSE109616	Salt-responsive genes are differentially regulated at the chromatin level between the leaf and root tissues in rice [ChIP-Seq]
GSE109618	Salt-responsive genes are differentially regulated at the chromatin level between the leaf and root tissues in rice
GSE110483	The underlying pathway involved in inter-subspecific hybrid male sterility in rice
GSE111767	Developing miRNA profiles for decoding salt stress tolerance in Pokkali rice
GSE111769	"Mirador" on the potential role of miRNAs in synergy of light and heat networks
GSE114090	ATAC-seq profiling of open chromatin with global epigenetic and transcriptional trends in two-line hybrid rice
GSE117047	Reversible Histone H2B Monoubiquitination Fine-tunes Abscisic Acid Signaling and Drought Response in Rice
GSE117150	Transcriptome changes caused by RBP-P mutations in rice seed
GSE119720	Comparative transcriptome and translatome analysis in rice revealed differential mRNA translation in Pokkali compared to IR29 under salt stress [Total RNA]
GSE119721	Comparative transcriptome and translatome analysis in rice revealed differential mRNA translation in Pokkali compared to IR29 under salt stress [polysomal RNA]
GSE119722	Comparative transcriptome and translatome analysis in rice revealed differential mRNA translation in Pokkali compared to IR29 under salt stress
GSE122021	A novel positive feed-back loop mediated by the membrane-associated transcription factor NTL3 is important for heat stress tolerance in rice
GSE124301	Transcriptome changes caused by RBP-L knockdown in rice grains
GSE124666	Transcriptome response to safener treatment in rice cell cultures
GSE126444	Evolution of heterochromatin and heterochromatin genes in the Oryza genomes reveals a new heterochromatin-euchromatin boundary
GSE126759	BTA1 controls tiller angle and shoot gravitropism by regulating auxin transport and signaling in rice
GSE126994	Dual RNA-seq of Xanthomonas oryzae pv. oryzicola infecting rice
GSE127665	Evolution of heterochromatin and heterochromatin genes in the Oryza genomes reveals a new heterochromatin-euchromatin boundary [ncRNA-Seq]
GSE130122	Divergence among rice cultivars reveals roles for transposition and epimutation in ongoing evolution of genomic imprinting
GSE131238	Comparative transcriptomic analysis of iron deficiency response in roots of Oryza sativa and O. rufipogon
GSE131964	Analysis of Nod factor receptor proteins in Rice
GSE132303	Transcriptome changes caused by Tudor-SN mutations in rice seed
GSE133866	Identification of known and novel miRNAs in the salt tolerant rice Oryza sativa cv. Pokkali in root and shoots of control and NaCl exposed seedlings
GSE134021	H3K36me3 ChIP-seq of 2 rice lines D248 and SH881
GSE137002	Early Cold Stress Responses in Post-meiotic Anthers from Tolerant and Sensitive Rice Cultivars
GSE145582	Cold tolerance in rice plants is partially controlled by root responses
GSE145869	Comparative transcriptomics and co-expression networks reveal tissue- and genotype-specific responses to reproductive-stage drought stress in rice (Oryza sativa L.) [panicle]
GSE145870	Comparative transcriptomics and co-expression networks reveal tissue- and genotype-specific responses to reproductive-stage drought stress in rice (Oryza sativa L.)
GSE148099	Transcriptome sequencing facilitates reveal molecular mechanisms between GSK2 and WRKY53
GSE150103	Transcriptomic expression patterns of two contrasting lowland rice varieties reveal high iron stress tolerance
GSE159816	Transcriptome of rice idr1-1 mutant
GSE160884	Plant DNA methylation sensitive to parent seed N content and mediated the influence of external nitrogen on OsNAR2.1 overexpression rice growth
GSE163616	OsMre11 is required for mitosis during rice growth and development
GSE173487	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and OsPEP1 Ri1 transgenic line in response to exogenous PEP1 Transcriptomes
GSE174017	Identification of Genes and miRNAs Affecting Pre-harvest Sprouting in Rice (Oryza sativa L.) by Transcriptome and Small RNAome Analyses
GSE178972	Difference expression genes analysis of wild type and csa mutant during rice seed germination
GSE183894	Gene expression profiling of drought-sensitive (IR64) and tolerant (N22) rice cultivars
GSE185198	Genome-Wide High Resolution Expression Pattern of Crown Root Primordia in Rice
GSE192747	Landscape of open chromatin regions in Rice upon exposure to abiotic stresses
GSE205805	RNA-seq and sRNA-seq analysis of rice lines of wild type and its mutant
GSE214130	Chromatin accessibility map of rice root tips at single-cell resolution [bulkATAC-seq]
GSE214131	Chromatin accessibility map of rice root tips at single-cell resolution [scATAC-seq]
GSE214132	Chromatin accessibility map of rice root tips at single-cell resolution
GSE214179	Synthetic apomixis transfers stably over multiple generations in hybrid rice
GSE220996	Molecular mapping and characterization of QTLs for grain quality traits in a RIL population of US rice under high nighttime temperature stress
GSE224013	Transcriptome, Small RNA, and Degradome Sequencing Reveals the Roles of MicroRNAs in Response to High Night Temperature Stress at the Filling Stage of Rice
GSE224933	OsNAR2.1 induced endogenous nitrogen concentration variation affects transcriptional expression of miRNAs in rice
GSE230463	The Effects of Low Temperature on the Global Increase of N6-methyldeoxyadenosine in Arabidopsis thaliana and Rice
GSE245353	RNA-seq and sRNA-seq analysis of rice lines of wild type and its mutant II