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GEO accession:
Series GSE161481
Query DataSets for GSE161481
Status
Public on Aug 04, 2022
Title
The pseudouridine synthase DKC1 binds to cytoplasmic transcripts containing H/ACA-box SnoRNA sequences affecting nuclear hormone receptor dependence
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
35996163
Submission date
Nov 13, 2020
Last update date
Aug 31, 2022
Contact name
Erik Dassi
E-mail(s)
erik.dassi@unitn.it
Organization name
University of Trento
Department
CIBIO
Street address
Via Sommarive, 9
City
Trento
State/province
TN
ZIP/Postal code
38123
Country
Italy
Platforms (1)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
Samples (27)
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GSM4908532
DKC1 Cytosol RIP - replicate 1
GSM4908533
IgG Cytosol RIP - replicate 1
GSM4908534
Input Cytosol - replicate 1
GSM4908535
DKC1 Cytosol RIP - replicate 2
GSM4908536
IgG Cytosol RIP - replicate 2
GSM4908537
Input Cytosol - replicate 2
GSM4908538
DKC1 Cytosol RIP - replicate 3
GSM4908539
IgG Cytosol RIP - replicate 3
GSM4908540
Input Cytosol - replicate 3
GSM4908541
DKC1 Cytosol RIP - replicate 4
GSM4908542
IgG Cytosol RIP - replicate 4
GSM4908543
Input Cytosol - replicate 4
GSM4908544
DKC1 Cytosol RIP - replicate 5
GSM4908545
IgG Cytosol RIP - replicate 5
GSM4908546
Input Cytosol - replicate 5
GSM4908547
scramble total RNA replicate 1
GSM4908548
scramble polysomal RNA replicate 1
GSM4908549
shDKC1 total RNA replicate 1
GSM4908550
shDKC1 polysomal RNA replicate 1
GSM4908551
scramble total RNA replicate 2
GSM4908552
scramble polysomal RNA replicate 2
GSM4908553
shDKC1 total RNA replicate 2
GSM4908554
shDKC1 polysomal RNA replicate 2
GSM4908555
scramble total RNA replicate 3
GSM4908556
scramble polysomal RNA replicate 3
GSM4908557
shDKC1 total RNA replicate 3
GSM4908558
shDKC1 polysomal RNA replicate 3
This SuperSeries is composed of the following SubSeries:
GSE161479
The pseudouridine synthase DKC1 binds to cytoplasmic transcripts containing H/ACA-box SnoRNA sequences affecting nuclear hormone receptor dependence [RIP-seq]
GSE161480
The pseudouridine synthase DKC1 binds to cytoplasmic transcripts containing H/ACA-box SnoRNA sequences affecting nuclear hormone receptor dependence [RNA-seq]
Relations
BioProject
PRJNA678374
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Supplementary data files not provided
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