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| Status |
Public on Jul 01, 2009 |
| Title |
Meiotic time course of open chromatin as measured by FAIRE |
| Platform organism |
Saccharomyces cerevisiae |
| Sample organism |
Saccharomyces cerevisiae SK1 |
| Experiment type |
Genome binding/occupancy profiling by array
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| Summary |
To investigate the relationship between chromatin organization and meiotic processes, we used Formaldehyde-Assisted Isolation of Regulatory Elements (FAIRE) to map open chromatin during the transition from mitosis to meiosis in the budding yeast Saccharomyces cerevisiae.
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| Overall design |
SK1 yeast strain SHy002 (MATa/MATα ho::LYS2/ho::LYS2 leu2::hisG/leu2::hisG lys2/lys2 ura3/ura3).
Meiotic Time Course with samples collected during vegetative growth (YPD) and 0 hr, 1.5hr, and 3hr after transfer to sporulation media (SM).
Regions of open chromatin were mapped using Formaldehyde-Assisted Isolation of Regulatory Elements (FAIRE).
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| Contributor(s) |
Berchowitz LE, Hanlon SE, Lieb JD, Copenhaver GP |
| Citation(s) |
19801530 |
| Submission date |
May 19, 2009 |
| Last update date |
Feb 15, 2018 |
| Contact name |
Sean Erik Hanlon |
| E-mail(s) |
sehanlon@gmail.com
|
| Phone |
919-843-3229
|
| Organization name |
University of Chicago
|
| Department |
Department of Human Genetics
|
| Lab |
Jason Lieb
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| Street address |
920 E. 58th Street – CLSC 515E
|
| City |
Chicago |
| State/province |
IL |
| ZIP/Postal code |
60637 |
| Country |
USA |
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| Platforms (1) |
| GPL4131 |
Agilent-014810 Yeast Whole Genome ChIP-on-Chip Microarray 4x44K (G4493A) |
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| Samples (12)
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| This SubSeries is part of SuperSeries: |
| GSE18256 |
Meiotic time course: open chromatin and expression profile |
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| Relations |
| BioProject |
PRJNA123431 |
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