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Platform GPL4131 Query DataSets for GPL4131
Status Public on Aug 17, 2006
Title Agilent-014810 Yeast Whole Genome ChIP-on-Chip Microarray 4x44K (G4493A)
Technology type in situ oligonucleotide
Distribution commercial
Organism Saccharomyces cerevisiae
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4493A
 
Description
Yeast ChIP-on-Chip Set 4x44K

Arrays of this design have barcodes that begin with 16014810 or 2514810.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Aug 17, 2006
Last update date Feb 15, 2018
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (802) GSM154072, GSM154074, GSM154075, GSM154076, GSM154079, GSM154080 
Series (56)
GSE6667 PolII occupancy
GSE6668 Nucleosome occupancy
GSE6669 H3 occupancy
Relations
Alternative to GPL10930

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GB_RANGE Accession.Version[start..end] (based on SGD October 2003 genome sequence)

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GB_RANGE
1 266 170 ScCGHBrightCorner pos
2 266 168 DarkCorner pos
3 266 166 DarkCorner pos
4 266 164 DarkCorner pos
5 266 162 DarkCorner pos
6 266 160 DarkCorner pos
7 266 158 DarkCorner pos
8 266 156 DarkCorner pos
9 266 154 DarkCorner pos
10 266 152 DarkCorner pos
11 266 150 DarkCorner pos
12 266 148 A_75_P01725145 FALSE YLL025W sgd|YLL025W|sgd|YLL025W:385|sgd|YLL024C:2354 chr12:000095101-000095159 DOWNSTREAM NC_001144.2[000095101..000095159]
13 266 146 A_75_P01760060 FALSE RNH203 sgd|YLR154C|sgd|RNH203:-478|sgd|YLR153C:-1217 chr12:000448764-000448823 PROMOTER NC_001144.2[000448764..000448823]
14 266 144 A_75_P01353403 FALSE IES1 sgd|YFL013C|sgd|IES1:1947 chr6:000107948-000108007 INSIDE NC_001138.3[000107948..000108007]
15 266 142 A_75_P01304758 FALSE AFG3 sgd|YER017C|sgd|AFG3:234 chr5:000191524-000191582 INSIDE NC_001137.2[000191524..000191582]
16 266 140 A_75_P01688477 FALSE PAN3 sgd|YKL025C|sgd|PAN3:1737 chr11:000390151-000390210 INSIDE NC_001143.3[000390151..000390210]
17 266 138 A_75_P02025438 FALSE TIR4 sgd|YOR009W|sgd|TIR4:1603|sgd|YOR010C:1013 chr15:000345907-000345966 DOWNSTREAM NC_001147.3[000345907..000345966]
18 266 136 A_75_P01312283 FALSE FCY2 sgd|YER056C|sgd|FCY2:483 chr5:000267600-000267659 INSIDE NC_001137.2[000267600..000267659]
19 266 134 A_75_P01431373 FALSE YGR068C sgd|YGR068C|sgd|YGR068C:487 chr7:000626569-000626627 INSIDE NC_001139.3[000626569..000626627]
20 266 132 A_75_P01784551 FALSE YSH1 sgd|YLR277C|sgd|YSH1:1948 chr12:000697519-000697576 INSIDE NC_001144.2[000697519..000697576]

Total number of rows: 45220

Table truncated, full table size 6077 Kbytes.






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