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Series GSE16702 Query DataSets for GSE16702
Status Public on Jun 24, 2009
Title ChIP-chip of PolII in Drosophila at different time points of development
Project modENCODE
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary This is a dataset generated by the Drosophila Regulatory Elements modENCODE Project led by Kevin P. White at the University of Chicago. This Series contains ChIP-chip data on Agilent 244K dual-color arrays for antibody: PolII at 12 different time-points of Drosophila development.

Note: 8wg16 is the name of PolII antibody for set2 datasets.

Current Dataset:

[GSM418514..GSM418522]: ChIP-chip of PolII in Drosophila pupae
[GSM418549..GSM418557]: ChIP-chip of 8wg16 in Drosophila adult female
[GSM418567..GSM418575]: ChIP-chip of 8wg16 in Drosophila embryos at 0-4 hours of development
[GSM418580..GSM418588]: ChIP-chip of 8wg16 in Drosophila embryos at 4-8 hours of development
[GSM418593..GSM418601]: ChIP-chip of 8wg16 in Drosophila L3 larvae
[GSM442398..GSM442406]: ChIP-chip of PolII in L2
[GSM442407..GSM442415]: ChIP-chip of PolII in L3
[GSM442416..GSM442424]: ChIP-chip of 8wg16 in Drosophila embryos at 4-8 hours of development - Set2
[GSM443110..GSM443118]: ChIP-chip of 8wg16 in Drosophila embryos at 16-20 hours of development

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
 
Overall design For each combination of time-point and antibody, triplicate ChIP experiments have been performed and hybridized on Agilent 244K arrays. 3 arrays per genome have been used so that each time-point is a set of 9 tiling arrays.
Web link http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
 
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA63463
Submission date Jun 18, 2009
Last update date Aug 19, 2013
Contact name Kevin P. White
E-mail(s) kpwhite@uchicago.edu
Organization name University of Chicago
Department Institute for Genomics and Systems Biology
Street address 900 E. 57th STR. 10th FL.
City Chicago
State/province IL
ZIP/Postal code 60615
Country USA
 
Platforms (3)
GPL6949 Agilent-019182 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 1 of 3
GPL6950 Agilent-019183 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 2 of 3
GPL6951 Agilent-019184 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 3 of 3
Samples (81)
GSM418514 Pupae_PolII_1_of_3_rep_1
GSM418515 Pupae_PolII_1_of_3_rep_2
GSM418516 Pupae_PolII_1_of_3_rep_3
This SubSeries is part of SuperSeries:
GSE15292 Drosophila at different time points of development: ChIP-chip, ChIP-seq, RNA-seq

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE16702_RAW.tar 5.4 Gb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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