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GEO accession:
Series GSE167581
Query DataSets for GSE167581
Status
Public on Apr 12, 2022
Title
Comparative 3D Genome Architecture in Vertebrates
Organisms
Danio rerio
;
Gallus gallus
;
Macaca mulatta
;
Homo sapiens
;
Canis lupus familiaris
;
Felis catus
;
Sus scrofa
;
Bos taurus
;
Ovis aries
;
Oryctolagus cuniculus
;
Mus musculus
;
Rattus norvegicus
Experiment type
Expression profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
35524220
Submission date
Feb 25, 2021
Last update date
Jul 18, 2022
Contact name
Mengnan He
E-mail(s)
hemengnan816@126.com
Phone
15283521733
Organization name
Sichuan Agriculture University
Street address
Huimin road 211#
City
Chengdu
ZIP/Postal code
611130
Country
China
Platforms (12)
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GPL20795
HiSeq X Ten (Homo sapiens)
GPL21273
HiSeq X Ten (Mus musculus)
GPL22918
HiSeq X Ten (Sus scrofa)
GPL23085
HiSeq X Ten (Danio rerio)
GPL23810
HiSeq X Ten (Ovis aries)
GPL24230
HiSeq X Ten (Bos taurus)
GPL24517
HiSeq X Ten (Gallus gallus)
GPL24522
HiSeq X Ten (Macaca mulatta)
GPL24688
HiSeq X Ten (Rattus norvegicus)
GPL27147
HiSeq X Ten (Canis lupus familiaris)
GPL27872
HiSeq X Ten (Oryctolagus cuniculus)
GPL29444
HiSeq X Ten (Felis catus)
Samples (54)
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GSM5110924
Hi-C data of Cow replicate 1
GSM5110925
Hi-C data of Cow replicate 2
GSM5110926
Hi-C data of Sheep replicate 1
GSM5110927
Hi-C data of Sheep replicate 2
GSM5110928
Hi-C data of Sheep replicate 3
GSM5110929
Hi-C data of Mouse replicate 3
GSM5110930
Hi-C data of Rattus replicate 1
GSM5110931
Hi-C data of Rhesus replicate 1
GSM5110932
Hi-C data of Dog replicate 1
GSM5110933
Hi-C data of Dog replicate 2
GSM5110934
Hi-C data of Dog replicate 3
GSM5110935
Hi-C data of Cat replicate 1
GSM5110936
Hi-C data of Cat replicate 2
GSM5110937
Hi-C data of Rabbit replicate 1
GSM5110938
Hi-C data of Rabbit replicate 2
GSM5110939
Hi-C data of Rabbit replicate 3
GSM5110940
Hi-C data of Zbrafish replicate 1
GSM5110941
Hi-C data of Chicken replicate 1
GSM5110942
Hi-C data of Chicken replicate 2
GSM5110943
Hi-C data of Chicken replicate 3
GSM5110944
Hi-C data of Chicken replicate 4
GSM5110945
Hi-C data of Chicken replicate 5
GSM5110946
RNA-seq data of Cow replicate 1
GSM5110947
RNA-seq data of Cow replicate 2
GSM5110948
RNA-seq data of Sheep replicate 1
GSM5110949
RNA-seq data of Sheep replicate 2
GSM5110950
RNA-seq data of Sheep replicate 3
GSM5110951
RNA-seq data of Mouse replicate 3
GSM5110952
RNA-seq data of Rattus replicate 1
GSM5110953
RNA-seq data of Rhesus replicate 1
GSM5110954
RNA-seq data of Dog replicate 1
GSM5110955
RNA-seq data of Dog replicate 2
GSM5110956
RNA-seq data of Dog replicate 3
GSM5110957
RNA-seq data of Cat replicate 1
GSM5110958
RNA-seq data of Cat replicate 2
GSM5110959
RNA-seq data of Rabbit replicate 1
GSM5110960
RNA-seq data of Rabbit replicate 2
GSM5110961
RNA-seq data of Rabbit replicate 3
GSM5110962
RNA-seq data of Zbrafish replicate 1
GSM5110963
RNA-seq data of Chicken replicate 1
GSM5110964
RNA-seq data of Chicken replicate 2
GSM5110965
RNA-seq data of Chicken replicate 3
GSM5110966
RNA-seq data of Chicken replicate 4
GSM5110967
RNA-seq data of Chicken replicate 5
GSM5110968
RNA-seq data of Pig replicate 1
GSM5110969
RNA-seq data of Pig replicate 2
GSM5110970
RNA-seq data of Pig replicate 3
GSM5110971
RNA-seq data of Pig replicate 4
GSM5266524
Hi-C data of Human replicate 1
GSM5266525
Hi-C data of Human replicate 2
GSM5266526
Hi-C data of Human replicate 3
GSM5266527
RNA-seq data of Human replicate 1
GSM5266528
RNA-seq data of Human replicate 2
GSM5266529
RNA-seq data of Human replicate 3
This SuperSeries is composed of the following SubSeries:
GSE167579
Comparative 3D Genome Architecture in Vertebrates (Hi-C)
GSE167580
Comparative 3D Genome Architecture in Vertebrates (RNA-Seq)
Relations
BioProject
PRJNA704983
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE167581_RAW.tar
89.0 Gb
(http)
(custom)
TAR (of BED, HDF5, XLS)
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