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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 21, 2017 |
| Title |
HiSeq X Ten (Danio rerio) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Danio rerio |
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| Submission date |
Feb 21, 2017 |
| Last update date |
Dec 18, 2017 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (759)
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GSM2496450, GSM2496451, GSM2715426, GSM2715427, GSM2715428, GSM2715429
GSM2715430, GSM2715431, GSM2715432, GSM2715433, GSM2715434, GSM2715435, GSM2715436, GSM2715437, GSM2715438, GSM2715439, GSM2715440, GSM2715441, GSM2715442, GSM2715443, GSM2715444, GSM2715445, GSM2715446, GSM2715447, GSM2715448, GSM2715449, GSM2715450, GSM2715451, GSM2715452, GSM2715453, GSM2715454, GSM2715455, GSM2715456, GSM2715457, GSM2715458, GSM2715459, GSM2715460, GSM2715461, GSM2715462, GSM2715463, GSM2865566, GSM2865567, GSM2865568, GSM2865569, GSM2865570, GSM2865571, GSM2892210, GSM2892211, GSM2892212, GSM2892213, GSM2892214, GSM2892215, GSM2946170, GSM2946171, GSM3005149, GSM3005150, GSM3005151, GSM3005152, GSM3005153, GSM3005154, GSM3005155, GSM3005156, GSM3005157, GSM3005158, GSM3005159, GSM3005160, GSM3005161, GSM3005162, GSM3005163, GSM3005164, GSM3005165, GSM3005166, GSM3005167, GSM3005168, GSM3005169, GSM3005170, GSM3005171, GSM3005172, GSM3005173, GSM3005174, GSM3005175, GSM3005176, GSM3005177, GSM3029081, GSM3029082, GSM3029083, GSM3029084, GSM3029085, GSM3029086, GSM3036928, GSM3036929, GSM3036930, GSM3036931, GSM3036932, GSM3036933, GSM3036934, GSM3036935, GSM3036936, GSM3070077, GSM3070078, GSM3070079, GSM3070080, GSM3070081, GSM3070082, GSM3070083, GSM3070084, GSM3070085, GSM3165194, GSM3165196, GSM3165197, GSM3165200, GSM3165202, GSM3165203, GSM3165204, GSM3165206, GSM3165207, GSM3165209, GSM3165210, GSM3165216, GSM3165217, GSM3165219, GSM3165220, GSM3165222, GSM3165223, GSM3165224, GSM3165225, GSM3165227, GSM3165230, GSM3165231, GSM3165232, GSM3165235, GSM3165238, GSM3165240, GSM3165241, GSM3165244, GSM3165245, GSM3165246, GSM3165247, GSM3165249, GSM3165251, GSM3165253, GSM3165255, GSM3165256, GSM3165257, GSM3165259, GSM3165262, GSM3165263, GSM3165264, GSM3165265, GSM3165266, GSM3165267, GSM3165268, GSM3324245, GSM3324246, GSM3324247, GSM3324248, GSM3324249, GSM3324250, GSM3324251, GSM3324252, GSM3325714, GSM3325715, GSM3325716, GSM3325717, GSM3359495, GSM3359496, GSM3402061, GSM3409390, GSM3409391, GSM3409392, GSM3409393, GSM3409394, GSM3409395, GSM3409396, GSM3409397, GSM3409398, GSM3409399, GSM3484056, GSM3484057, GSM3484058, GSM3484059, GSM3484060, GSM3484061, GSM3484062, GSM3484063, GSM3484064, GSM3484065, GSM3484066, GSM3484067, GSM3484068, GSM3484069, GSM3484070, GSM3484071, GSM3503269, GSM3503270, GSM3503271, GSM3503272, GSM3503273, GSM3503274, GSM3503275, GSM3503276, GSM3503277, GSM3503278, GSM3503279, GSM3503280, GSM3503281, GSM3503282, GSM3503283, GSM3503284, GSM3505059, GSM3589570, GSM3589571, GSM3589572, GSM3589573, GSM3589574, GSM3589575, GSM3589576, GSM3589577, GSM3589578, GSM3589579, GSM3589580, GSM3589581, GSM3589582, GSM3589583, GSM3589584, GSM3589585, GSM3589586, GSM3589587, GSM3589588, GSM3589589, GSM3589590, GSM3589591, GSM3589592, GSM3589593, GSM3589594, GSM3589595, GSM3589596, GSM3589597, GSM3589598, GSM3589599, GSM3589600, GSM3589601, GSM3589602, GSM3589603, GSM3589604, GSM3589605, GSM3589606, GSM3589607, GSM3589608, GSM3589609, GSM3589610, GSM3589611, GSM3589612, GSM3589613, GSM3589614, GSM3589615, GSM3589616, GSM3589617, GSM3589618, GSM3589619, GSM3589620, GSM3589621, GSM3589622, GSM3589623, GSM3589624, GSM3589625, GSM3714426, GSM3714427, GSM3714428, GSM3714429, GSM3714430, GSM3714431, GSM3714432, GSM3714433, GSM3714434, GSM3714435, GSM3714436, GSM3714437, GSM3724764, GSM3724765, GSM3724766, GSM3724767, GSM3724768, GSM3724769, GSM3724770, GSM3724771, GSM3724772, GSM3724773, GSM3740949, GSM3740950, GSM3740952, GSM3740953, GSM3740954, GSM3740955, GSM3740957, GSM3740958, GSM3740959, GSM3740960, GSM3740961, GSM3768147, GSM3768148, GSM3768149, GSM3768150, GSM3768151, GSM3768152, GSM3768153, GSM3768154, GSM3768155, GSM3768156, GSM3768157, GSM3768158, GSM3768159, GSM3768160, GSM3768161, GSM3768162, GSM3768163, GSM3942696, GSM3942697, GSM3942698, GSM3942699, GSM3945999, GSM3946000, GSM3946001, GSM3946002, GSM3946003, GSM3946004, GSM4065042, GSM4065043, GSM4065044, GSM4065045, GSM4157936, GSM4157937, GSM4157938, GSM4157939, GSM4210780, GSM4210781, GSM4210782, GSM4210783, GSM4210784, GSM4210785, GSM4226235, GSM4226236, GSM4226237, GSM4226238, GSM4226239, GSM4226240, GSM4226241, GSM4226242, GSM4226243, GSM4226244, GSM4274613, GSM4274614, GSM4274615, GSM4274616, GSM4274617, GSM4274618, GSM4274619, GSM4274620, GSM4274621, GSM4274622, GSM4274623, GSM4274624, GSM4332328, GSM4332329, GSM4332330, GSM4332331, GSM4332332, GSM4332333, GSM4384817, GSM4384818, GSM4432614, GSM4432615, GSM4432616, GSM4432617, GSM4432618, GSM4432619, GSM4432620, GSM4432621, GSM4432622, GSM4432623, GSM4432624, GSM4432625, GSM4500809, GSM4500810, GSM4500965, GSM4500966, GSM4500967, GSM4500968, GSM4572224, GSM4572225, GSM4572226, GSM4572227, GSM4572228, GSM4572229, GSM4572230, GSM4572231, GSM4572232, GSM4572233, GSM4661979, GSM4661980, GSM4661981, GSM4661983, GSM4661984, GSM4661986, GSM4661988, GSM4661990, GSM4661994, GSM4661996, GSM4661998, GSM4662006, GSM4662007, GSM4662008, GSM4662009, GSM4662010, GSM4662011, GSM4662012, GSM4662013, GSM4662014, GSM4662015, GSM4662016, GSM4662017, GSM4662018, GSM4662019, GSM4662020, GSM4662021, GSM4662022, GSM4662023, GSM4662024, GSM4662025, GSM4662028, GSM4662029, GSM4662030, GSM4662031, GSM4662032, GSM4662033, GSM4662034, GSM4662035, GSM4662036, GSM4662037, GSM4662038, GSM4662039, GSM4662040, GSM4662041, GSM4662042, GSM4662043, GSM4662044, GSM4662045, GSM4662046, GSM4662047, GSM4662048, GSM4662049, GSM4662050, GSM4662051, GSM4662052, GSM4662053, GSM4662054, GSM4662055, GSM4662056, GSM4662057, GSM4662058, GSM4662059, GSM4662060, GSM4662061, GSM4662062, GSM4662063, GSM4662064, GSM4662065, GSM4662066, GSM4662067, GSM4662070, GSM4662071, GSM4662072, GSM4662073, GSM4662074, GSM4662075, GSM4662076, GSM4662077, GSM4662078, GSM4662079, GSM4662080, GSM4662081, GSM4725742, GSM4725743, GSM4725744, GSM4725745, GSM4725746, GSM4725747, GSM4725748, GSM4725749, GSM4725750, GSM4725751, GSM4725752, GSM4725753, GSM4725754, GSM4725755, GSM4725756, GSM4725757, GSM4725758, GSM4725759, GSM4777189...
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You can also download a list of all accessions here
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| Series (70)
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| GSE95118 |
Transcriptome Analysis of Zfpm1 Function in Early Zebrafish Embryogenesis and Postembryonic Heart Development |
| GSE101779 |
Inherited DNA methylation primes the establishment of accessible chromatin during genome activation |
| GSE107369 |
Characterization of lncRNAs involved in cold acclimation of zebrafish ZF4 cells |
| GSE109553 |
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and smyd4 mutant zebrafish cardiac transcriptomes |
| GSE110663 |
H3K4me3 and H3K27me3 modification profiling in early zebrafish embryo |
| GSE111359 |
Inhibition of embryonic HSP-90 function causes variation of cold tolerance in zebrafish |
| GSE111677 |
The genome of oocytes can be edited in vivo in the zebrafish ovary |
| GSE112433 |
Characterization of the innate immune response to Streptococcus pneumoniae infection in zebrafish |
| GSE114954 |
Widespread enhancer dememorization and promoter priming during parental-to-zygotic transition |
| GSE118288 |
Characterization of the immune response to Mycobacterium marinum infection in zebrafish |
| GSE118350 |
Characterization of the immune response to Mycobacterium marinum infection in zebrafish [mutant 463] |
| GSE120503 |
Multi-dimensional transcriptome analysis of an intact hematopoietic organ for HSPC expansion [10x] |
| GSE120581 |
Multi-dimensional transcriptome analysis of an intact hematopoietic organ for HSPC expansion |
| GSE120724 |
Dynamic landscapes and regulome of mRNA structure during zebrafish early embryogenesis |
| GSE122722 |
Retention of paternal epigenetic memory in the developing teleost germline [WGBS] |
| GSE122723 |
Retention of paternal epigenetic memory in the developing teleost germline |
| GSE123439 |
mRNA-seq of gonads from adult zebrafish treated with aromatase inhibitor and control |
| GSE123493 |
Retention of paternal epigenetic memory in the developing teleost germline [BiSulfite-seq] |
| GSE126039 |
mRNA-seq of zebrafish treated with sex hormone 17β-estradiol and aromatase inhibitor exemestane during sex development |
| GSE129499 |
RNA sequencing analyses of grl/hey2-overexpressing hearts and control hearts, as well as grl/hey2-deficient hearts and wild-type hearts following ventricular resection at 7 dpa |
| GSE129899 |
Next Generation Sequencing Facilitates Analysis of Wild Type and glioma Transcriptomes |
| GSE130487 |
Characterization of the zebrafish cell landscape at single-cell resolution |
| GSE134055 |
A map of cis-regulatory elements and 3D genome structures in zebrafish |
| GSE134345 |
Transcriptomic analysis reveals potential mechanisms of toxicity in a combined exposure to dibutyl phthalate and diisobutyl phthalate in zebrafish (Danio rerio) ovary |
| GSE134399 |
Identification and characterization of miRNAs involved in cold acclimation of zebrafish ZF4 cells |
| GSE136994 |
Evaluation of the potential toxicity mechanism of single and combined exposure of dibutyl phthalate and diisobutyl phthalate to zebrafish (Danio rerio) testis based on transcriptomic analysis |
| GSE141664 |
Single-cell sequencing reveals heterogeneity effects of bisphenol A on zebrafish embryonic development |
| GSE142352 |
RNA-seq of adult zebrafish gonads in two sexes |
| GSE142353 |
Transcriptome of juvenile zebrafish treated with the aromatase inhibitor exemestane and solvent control |
| GSE142355 |
Anti-masculinization induced by aromatase inhibitors in adult female zebrafish |
| GSE145760 |
Graphene oxide nanoparticles induce hepatic dysfunction through the regulation of innate immune signaling in zebrafish (Danio rerio) |
| GSE146404 |
A Single-Cell Resolution Atlas of expanding hematopoietic organ in zebrafish |
| GSE147526 |
A Zebrafish-Based Orthotopic Glioblastoma Xenograft Model for Preclinical Drug Screening and Clinical Drug Sensitivity Prediction |
| GSE149416 |
Inheritance and reprogramming of non-CG methylation at satellite DNA repeats |
| GSE149424 |
Generation and molecular characterisation of transient tet1/2/3 zebrafish knockouts |
| GSE151307 |
Targeting neural cell senescence reverses neuropsychiatric disorders |
| GSE156158 |
Whole-transcriptome RNA-seq analysis of zebrafish microglia subpopulations |
| GSE157865 |
Characterization of small RNAs in early zebrafish PGCs |
| GSE158104 |
Keratin5-cytoskeleton-BMP4 network regulates cell phenotype conversions during cardiac regeneration |
| GSE159162 |
Genes related to microtubule functions were downregulated in sinhcaf mutant FG follicles and eggs |
| GSE162820 |
Inhibition of TGF-β/Smad3 signaling disrupts cardiomyocyte cell cycle progression and EMT-like migration during ventricle regeneration |
| GSE164728 |
Knockout of zebrafish colony-stimulating factor 1 receptor by CRISPR/Cas9 affects metabolism and locomotion capacity |
| GSE166646 |
Single cell RNA-seq analysis for normal lymphocytes and IRF4-driven zebrafish tumors |
| GSE166650 |
Zebrafish tumors driven by overexpression of human IRF4 |
| GSE167579 |
Comparative 3D Genome Architecture in Vertebrates (Hi-C) |
| GSE167580 |
Comparative 3D Genome Architecture in Vertebrates (RNA-Seq) |
| GSE167581 |
Comparative 3D Genome Architecture in Vertebrates |
| GSE173639 |
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa-/- zebrafish embryos |
| GSE175951 |
Methylome inheritance and enhancer dememorization construct an epigenetic gate safeguarding embryonic programs |
| GSE176455 |
An S-phase checkpoint gated by Bms1 and Ttf1 at the rDNA loci |
| GSE176853 |
Perfluorooctanoic acid toxicity on zebrafish embryonic development and mechanism exploration with single-cell RNA sequencing |
| GSE178150 |
Construction the larval and adult zebrafish cell atlas at single cell resolution |
| GSE178151 |
Construction of the whole animal at a single cell resolution |
| GSE178506 |
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and atrn-/- brain Transcriptomes |
| GSE179673 |
Nanopore sequencing and data analysis for base-resolution genome-wide 5-methylcytosine profiling |
| GSE179894 |
Disruption of glucagon receptor increase α-cell glucagon expression and secretion beyond hyperplasia in zebrafish |
| GSE181395 |
Gfi1aa/Lsd1 facilitates hemangioblast differentiation into primitive erythrocytes by targeting etv2 and sox7 in zebrafish |
| GSE182944 |
Parental copper stress induces offspring developmental defects by altering DNA methylation in zebrafish [WGBS] |
| GSE182946 |
Parental copper stress induces offspring developmental defects by altering DNA methylation in zebrafish |
| GSE183002 |
Comprehensive genome wide analysis of Satb2 function during vertebrate embryogenesis |
| GSE188331 |
Base-resolution DNA hydroxymethylation maps of purple sea urchin (Strongylocentrotus purpuratus), european lancelet (Branchiostoma lanceolatum) and zebrafish (Danio rerio) using ACE-seq |
| GSE188332 |
DNA hydroxymethylation profiling of purple sea urchin (Strongylocentrotus purpuratus), european lancelet (Branchiostoma lanceolatum) and zebrafish (Danio rerio) using hMeDIP-seq |
| GSE188334 |
Base-resolution 5-hydroxymethylcytosine maps of sea urchin and lancelet embryos and adult tissues |
| GSE188511 |
Characterization of pdgfrb reporter expressing cells from the adult zebrafish heart ventricles by single cell RNA sequencing |
| GSE225204 |
Transcriptomic analysis of 52 hpf mbd5 KO & KD embryos and 7 dpf mb5 KO & OE larves |
| GSE225863 |
Integrative single-cell transcriptomics clarifies adult neurogenesis and macroglia evolution |
| GSE236184 |
Silencing of the Stat1-bcl2 axis accelerates efficient apoptosis of immature T lymphocytes with DNA damage in zebrafish mcm5 mutants |
| GSE236393 |
Effect of ionizing radiation exposure on zebrafish embryo development by single-cell RNA profiling |
| GSE237627 |
Multi-omics analysis of zebrafish response to tick saliva reveals biological processes associated with alpha-Gal syndrome |
| GSE254980 |
Transgenic tools targeting striatal and pallidal subpopulations reveal both evolutionary conservation and specialization of cortico-basal ganglia circuits in zebrafish |
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| Supplementary data files not provided |
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