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Series GSE167879 Query DataSets for GSE167879
Status Public on Mar 01, 2021
Title The lncRNA APOLO and the methylcytosine-binding protein VIM1 are thermomorphogenesis regulators
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary We compared the change of transcriptome induced by the over expression of the lncRNA APOLO, the downregulation of the methylcytosine-binding protein VIM1 and the increased temperature of growth. A correlation of up- and down-regulated genes in WT in response to 29°C is observed for OE APOLO-1 and vim1-3 at 23°C.
Overall design 4-day-old Col, 35S:APOLO or vim1-3 seedlings growing at 23°C or 29°C were analyzed for RNA-Seq in triplicates
Contributor(s) Fonouni-Farde C, Christ A, Blein T, Ariel F
Citation(s) 36038910
Submission date Feb 28, 2021
Last update date Sep 15, 2022
Contact name Thomas Blein
Organization name CNRS
Lab IPS2
Street address rue de Noetzlin
City Gif-sur-Yvette
ZIP/Postal code 91190
Country France
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (12)
GSM5114447 Col0_23C_A
GSM5114448 Col0_23C_B
GSM5114449 Col0_23C_C
BioProject PRJNA705455
SRA SRP308553

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE167879_RAW.tar 1.6 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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