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Series GSE168624 Query DataSets for GSE168624
Status Public on May 18, 2021
Title Repression of endogenous retroviruses is required for mammary gland development and homeostasis [microarray]
Organism Mus musculus
Experiment type Expression profiling by array
Summary We demonstrate that loss of the histone H3K9 methyltransferase G9a in the developing mammary epithelium results in de novo chromatin opening which leads to severely impaired development of the mammary ductal tree, concomitant with impaired stem cell potential and disrupted intraductal polarity. Intriguingly, these phenotypes are not attributed to alterations in lineage specification and fidelity of the basal and luminal cell fates. Instead, increased chromatin opening in G9a-ablated mammary epithelium results in derepression of Long Terminal Repeat (LTR) sequences, most prominently of the ERVK family. When reverse-transcribed, these endogenous retroviruses generate double-stranded DNA (dsDNA) that accumulates in the cytosol of G9acKO mammary epithelial cells and trigger a pyroptotic antiviral innate immune response within mammary fat pads. Importantly, this altered G9acKO mammary milieu precludes functional outgrowth of even wild-type mammary stem cells upon transplantation. Our results show that tight repression of endogenous retroviruses is required for proper mammary gland development and maintenance. We demonstrate that altering chromatin accessibility of retroviral elements, as occurs during aging and cancer, severely disrupts functional mammary gland development and mammary stem cell activity through both cell autonomous and cell non-autonomous mechanisms.
 
Overall design Effects of the histone H3K9 methyltransferase G9a deletion in the developing mammary gland.
 
Contributor(s) Avgustinova A, Laudanna C
Citation(s) 34010627
Submission date Mar 10, 2021
Last update date Aug 17, 2021
Contact name Laudanna Carmelo
E-mail(s) carmelo.laudanna@irbbarcelona.org
Organization name Institute for Research in Biomedicine (IRB-Barcelona)
Department Aging and Metabolism
Lab Stem cells and Cancer Lab
Street address Baldiri i Reixac, 10
City Barcelona
State/province Barcelona
ZIP/Postal code 08028
Country Spain
 
Platforms (1)
GPL23038 [Clariom_S_Mouse] Affymetrix Clariom S Assay, Mouse (Includes Pico Assay)
Samples (16)
GSM5151416 793 2020
GSM5151417 794 2020
GSM5151418 795 2020
This SubSeries is part of SuperSeries:
GSE149978 Repression of endogenous retroviruses is required for mammary gland development and homeostasis
Relations
BioProject PRJNA713294

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Supplementary file Size Download File type/resource
GSE168624_RAW.tar 19.7 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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