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Series GSE168961 Query DataSets for GSE168961
Status Public on Apr 01, 2022
Title RNAseq facilitates quantitative analysis of wildtype, pdia6 -/- and focad -/- zebrafish livers transcriptome
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary pdia6 knockout zebrafish and focad knockout zebrafish were generated to model liver diseases observed in human patient. Livers were harvested from wt, pdia6 -/- and focad -/- adult zebrafish for RNASeq to study its transcriptome profile.
Overall design Liver transcriptome profile of wt, pdia6 knockout and focad knockout zebrafish.
Contributor(s) Reversade B, Teoh T, Traspas RM
Citation(s) 35864190
Submission date Mar 15, 2021
Last update date May 17, 2024
Contact name Tze Shin Teoh
Phone +6591990692
Organization name Genome Institute of Singapore
Lab Bruno Reversade Lab
Street address 8A, BIOMEDICAL GROVE
ZIP/Postal code 138648
Country Singapore
Platforms (1)
GPL24995 Illumina NovaSeq 6000 (Danio rerio)
Samples (9)
GSM5172879 AB-1 wt liver
GSM5172880 AB-2 wt liver
GSM5172881 AB-3 wt liver
BioProject PRJNA714665
SRA SRP310749

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE168961_FOCAD_KOvsWT.Differential_analysis_results.txt.gz 569.2 Kb (ftp)(http) TXT
GSE168961_FPKM_WT_FOCAD_PDIA6.txt.gz 1.2 Mb (ftp)(http) TXT
GSE168961_PDIA6_KOvsWT.Differential_analysis_results.txt.gz 566.8 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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