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GEO accession:
Series GSE169180
Query DataSets for GSE169180
Status
Public on Jun 01, 2021
Title
FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin
Organism
Arabidopsis thaliana
Experiment type
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
33942410
Submission date
Mar 18, 2021
Last update date
Aug 31, 2021
Contact name
xinjian He
E-mail(s)
hexinjian@nibs.ac.cn
Organization name
National Institute of Biological Sciences
Lab
hexinjian
Street address
No. 7, zhongguancun life science park road, changping district
City
Beijing
ZIP/Postal code
102206
Country
China
Platforms (3)
GPL23157
HiSeq X Ten (Arabidopsis thaliana)
GPL26208
Illumina NovaSeq 6000 (Arabidopsis thaliana)
GPL28290
DNBSEQ-G400 (Arabidopsis thaliana)
Samples (40)
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GSM5179440
Col-0_rep1 [RNA-seq]
GSM5179441
Col-0_rep2 [RNA-seq]
GSM5179442
Col-0_rep3 [RNA-seq]
GSM5179443
Col-0_rep4 [RNA-seq]
GSM5179444
fve_rep1 [RNA-seq]
GSM5179445
fve_rep2 [RNA-seq]
GSM5179446
pdp1/2/3_rep1 [RNA-seq]
GSM5179447
pdp1/2/3_rep2 [RNA-seq]
GSM5179448
pdp1/2/3;rrm1_rep1 [RNA-seq]
GSM5179449
pdp1/2/3;rrm1_rep2 [RNA-seq]
GSM5179450
rrm1_rep1 [RNA-seq]
GSM5179451
rrm1_rep2 [RNA-seq]
GSM5179452
suvh2/9_rep1 [RNA-seq]
GSM5179453
suvh2/9_rep2 [RNA-seq]
GSM5179581
Col-0_rep1 [Bisulfite-seq]
GSM5179582
Col-0_rep2 [Bisulfite-seq]
GSM5179583
Col-0_rep3 [Bisulfite-seq]
GSM5179585
Col-0_rep4 [Bisulfite-seq]
GSM5179586
fve_rep1 [Bisulfite-seq]
GSM5179587
fve_rep2 [Bisulfite-seq]
GSM5179588
fve;rrm1_rep1 [Bisulfite-seq]
GSM5179589
fve;rrm1_rep2 [Bisulfite-seq]
GSM5179590
pdp1/2/3_rep1 [Bisulfite-seq]
GSM5179591
pdp1/2/3_rep2 [Bisulfite-seq]
GSM5179592
pdp1/2/3;rrm1_rep1 [Bisulfite-seq]
GSM5179593
pdp1/2/3;rrm1_rep2 [Bisulfite-seq]
GSM5179594
rrm1_rep1 [Bisulfite-seq]
GSM5179595
rrm1_rep2 [Bisulfite-seq]
GSM5179596
rrm1_rep3 [Bisulfite-seq]
GSM5179598
rrm1_rep4 [Bisulfite-seq]
GSM5179599
suvh2/9_rep1 [Bisulfite-seq]
GSM5179600
suvh2/9_rep2 [Bisulfite-seq]
GSM5179611
Col-0_H3Ac_rep1 [ChIP-seq]
GSM5179612
Col-0_H3Ac_rep2 [ChIP-seq]
GSM5179613
fve_H3Ac_rep1 [ChIP-seq]
GSM5179614
fve_H3Ac_rep2 [ChIP-seq]
GSM5179615
suvh2/9_H3Ac_rep1 [ChIP-seq]
GSM5179617
suvh2/9_H3Ac_rep2 [ChIP-seq]
GSM5272779
Col_H3K27me3_rep1
GSM5272780
Col_H3K27me3_rep2
This SuperSeries is composed of the following SubSeries:
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GSE169174
FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin [RNA-seq]
GSE169178
FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin [Bisulfite-seq]
GSE169179
FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin [ChIP-seq]
GSE173630
FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin [H3K27me3 ChIP-Seq].
Relations
BioProject
PRJNA715485
Download family
Format
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Supplementary file
Size
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File type/resource
GSE169180_RAW.tar
7.9 Gb
(http)
(custom)
TAR (of BW)
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