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Series GSE17068 Query DataSets for GSE17068
Status Public on Dec 15, 2012
Title Inducing and Predicting Immune Tolerance After Kidney Transplantation
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Background
Immune tolerance and persistent mixed chimerism can be achieved reproducibly after combined organ and hematopoietic cell transplantation in mice conditioned with total lymphoid irradiation plus anti-thymocyte globulin. We studied the safety and reproducibility of this approach in a cohort of kidney transplant patients, and tried to identify immune monitoring procedures that can predict tolerance and guide complete immunosuppressive drug withdrawal.
Methods
Ten patients conditioned with 10 doses of total lymphoid irradiation and 5 doses of anti-thymocyte globulin were given kidney transplants and an injection of CD34+ hematopoietic progenitor cells and T cells from HLA matched donors. Blood cell monitoring included changes in chimerism, balance of T cell subsets, gene expression, and responses to donor alloantigens.
Results
Nine of 10 patients developed multi-lineage chimerism without graft versus host disease (GVHD), and all had excellent graft function at the last observation point. Five of these with chimerism persisting for at least 12 months were completely withdrawn from immunosuppressive drugs for 6 to 35 months. Blood cells from patients off drugs showed development of specific unresponsiveness to donor alloantigens, “tolerance” profiles on gene microarrays, early high ratios of regulatory versus conventional naïve T cells, and early high levels of chimerism among NK cells.
Conclusions
Total lymphoid irradiation, and anti-thymocyte globulin promoted the development of persistent chimerism and tolerance in a cohort of patients given kidney transplants and donor cell injections. Assays were identified that can assist in the safe withdrawal of immunosuppressive drugs.
 
Overall design 45 Agilent Microarray samples were conducted, including 16 tolerance patients, 10 chronic rejection patients, 5 healthy normal controls, and 7 paired pre and post-transplant induced tolerance patients. The aim is to see whether induced tolerance patients show operational tolerance gene expression signature and can withdraw or minimize the immunosuppression regimens.
 
Contributor(s) Scandling JD, Busque S, Dejbakhsh-Jones S, Li L, Benike C, Hsieh S, Sigdel T, Mukhopadhyay A, Holmes T, Shizuru JA, Lowsky R, Engleman EG, Sarwal MM, Strober S
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Submission date Jul 13, 2009
Last update date Jan 23, 2019
Contact name Li Li
E-mail(s) li.li@mssm.edu
Phone 6507243765
Organization name Stanford University
Department Pediatric
Lab Sarwal Lab
Street address 300 pastuer dr.,
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL6480 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Probe Name version)
Samples (45)
GSM427206 chronic rejection sample 1
GSM427347 chronic rejection sample 2
GSM428778 chronic rejection sample 3
Relations
BioProject PRJNA119777

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE17068_RAW.tar 633.9 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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