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Series GSE172420 Query DataSets for GSE172420
Status Public on Nov 15, 2021
Title Pluripotent stem cells related to embryonic disc exhibit common self-renewal requirements in diverse livestock species
Organisms Sus scrofa; Bos taurus; Ovis aries
Experiment type Expression profiling by high throughput sequencing
Summary Despite four decades of effort, robust propagation of pluripotent stem cells from livestock animals remains challenging. The requirements for self-renewal are unclear and the relationship of cultured stem cells to pluripotent cells resident in the embryo uncertain. Here we avoided feeder cells or serum factors to provide a defined culture microenvironment. We show that the combination of Activin A, Fibroblast growth factor, and Wnt inhibitor XAV939 (AFX), supports establishment and continuous expansion of pluripotent stem cell lines from porcine, ovine and bovine embryos. Germ layer differentiation was evident in teratomas and readily induced in vitro. Global transcriptome analyses highlighted commonality in transcription factor expression across the three species, while global comparison with porcine embryo stages showed proximity to bilaminar disc epiblast. Clonal genetic manipulation and gene targeting were exemplified in porcine stem cells. We further demonstrated that genetically modified AFX stem cells gave rise to cloned porcine foetuses by nuclear transfer. In summary, for major livestock mammals pluripotent stem cells related to the formative embryonic disc are reliably established using a common and defined signaling environment.
 
Overall design RNA-seq analysis of EDSCs established from pig, sheep and cow embryos
 
Contributor(s) Kinoshita M, Spindlow D, Bornelöv S, Stirparo GG, Smith A
Citation(s) 34874452
Submission date Apr 20, 2021
Last update date Jan 11, 2022
Contact name Daniel Spindlow
Organization name University of Exeter
Department Living Systems Institute
Lab Smith Lab
Street address Stocker Road
City Exeter
State/province Devon
ZIP/Postal code EX4 4QD
Country United Kingdom
 
Platforms (3)
GPL26012 Illumina NovaSeq 6000 (Bos taurus)
GPL26351 Illumina NovaSeq 6000 (Sus scrofa)
GPL27721 Illumina NovaSeq 6000 (Ovis aries)
Samples (33)
GSM5255659 Pig1 p6
GSM5255660 Pig1 p8
GSM5255661 Pig1 p10
Relations
BioProject PRJNA723284
SRA SRP315554

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE172420_Cow_EDSC_raw_counts.txt.gz 1.3 Mb (ftp)(http) TXT
GSE172420_Pig_EDSC_raw_counts.txt.gz 1.3 Mb (ftp)(http) TXT
GSE172420_Sheep_EDSC_raw_counts.txt.gz 2.0 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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