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| Status |
Public on Jan 01, 2022 |
| Title |
SMARTseq data of zebrafish sox10+ cells |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The goals of this study are to compare transcriptome profiling (mRNA level) and singnaling pathways between slc30a1 mutant zebrafish and their siblings. We found pathways in cell differentiation and migration were different between these two groups, and the stem markers of nueral crest progenitors were upregulated in mutants.
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| Overall design |
sox10+ cells from slc30a1 mutant zebrafish and their siblings at 2 dpf and 2.5 dpf were sorting out by FACS machine, whole RNA were extraced and performed SMARTseq analysis.
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| Contributor(s) |
Xia Z, Bi X, Wang F, Min J |
| Citation(s) |
34977877 |
| |
| Submission date |
May 01, 2021 |
| Last update date |
Jan 10, 2022 |
| Contact name |
Zhidan Xia |
| Organization name |
Zhejiang University School of Medicine
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| Street address |
NO. 866 Yuhangtang Road
|
| City |
Hangzhou |
| ZIP/Postal code |
310058 |
| Country |
China |
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| Platforms (1) |
| GPL24995 |
Illumina NovaSeq 6000 (Danio rerio) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA726733 |
| SRA |
SRP318111 |
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