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| Status |
Public on May 18, 2021 |
| Title |
BRG1 S1382 phosphorylation regulates neuronal activity-dependent gene activation [RNA-seq_B] |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
BRG1 S1382 phospho-mutations led to altered gene activation in neurons in response to neuronal activation
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| Overall design |
Wildtype and Brg1-S1382A or Brg1-S1382E knock-in primary cortical neurons were treated with KCl for 1 h. Gene expression profiles were examined uisng RNA-seq
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| Contributor(s) |
Wu J, Xuan Z, Kim B, Luo Y |
| Citation(s) |
34260936 |
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| Submission date |
May 17, 2021 |
| Last update date |
Aug 03, 2021 |
| Contact name |
Zhenyu Xuan |
| E-mail(s) |
zhenyu.xuan@utdallas.edu
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| Phone |
972-883-2518
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| Organization name |
UT Dallas
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| Street address |
800 West Campbell
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| City |
Richardson |
| State/province |
TX |
| ZIP/Postal code |
75080 |
| Country |
USA |
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| Platforms (1) |
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| Samples (14)
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| GSM5320129 |
Neuron Brg1-SA, Basal - rep2 |
| GSM5320130 |
Neuron Brg1-SE, KCl treated - rep1 |
| GSM5320131 |
Neuron Brg1-SE, Basal - rep1 |
| GSM5320132 |
Neuron Brg1-SE, KCl treated - rep2 |
| GSM5320133 |
Neuron Brg1-SE, Basall - rep2 |
| GSM5320134 |
Neuron wildtype , KCl treated --littermate control for Brg1-SA samples, rep 1 |
| GSM5320135 |
Neuron wildtype, Basal --littermate control for Brg1-SA samples, rep 1 |
| GSM5320136 |
Neuron wildtype , KCl treated --littermate control for Brg1-SA samples, rep 2 |
| GSM5320137 |
Neuron wildtype, Basal --littermate control for Brg1-SA samples, rep 2 |
| GSM5320138 |
Neuron wildtype , KCl treated --littermate control for Brg1-SE samples, rep 1 |
| GSM5320139 |
Neuron wildtype, Basal --littermate control for Brg1-SE samples, rep 1 |
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| This SubSeries is part of SuperSeries: |
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| Relations |
| BioProject |
PRJNA730578 |
| SRA |
SRP320173 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE174584_Brg1.2020.CNT.gene.matrix.gz |
1.3 Mb |
(ftp)(http) |
MATRIX |
| GSE174584_Brg1.2020.CNT.isoform.matrix.gz |
4.4 Mb |
(ftp)(http) |
MATRIX |
| GSE174584_Brg1.2020.TPM.gene.matrix.gz |
1.7 Mb |
(ftp)(http) |
MATRIX |
| GSE174584_Brg1.2020.TPM.isoform.matrix.gz |
4.8 Mb |
(ftp)(http) |
MATRIX |
| GSE174584_RAW.tar |
57.7 Mb |
(http)(custom) |
TAR (of TSV) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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