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| Status |
Public on Mar 09, 2010 |
| Title |
Tbx6b ChIP-chip on Ciona intestinalis embryo (early gastrula) |
| Organism |
Ciona intestinalis |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
|
| Summary |
A genomic overview of in vivo binding of a transcription factor Tbx6b in the ascidian early gastrula embryo.
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| Overall design |
Fertilized eggs were electroporated with a construct encoding GFP-tagged Tbx6b. After fixation, chromatin was sonicated to obtain DNA fragments with an average of size of 1kb. The DNA fragments were enriched by immunoprecipitation with an polyclonal antibody specific for GFP (Invitrogen). The immunoprecipitated and WCE (Whole Cell Extract) DNA were amplified by LM-PCR for the Chip analysis. Two independent experiments were performed to reduce experimental errors.
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| Contributor(s) |
Satou Y, Kubo A |
| Citation(s) |
20392745 |
| |
| Submission date |
Aug 17, 2009 |
| Last update date |
Jul 14, 2015 |
| Contact name |
Atsushi Kubo |
| Organization name |
Kyoto University
|
| Department |
Department of zoology, Graduate School of Science
|
| Street address |
Sakyo-ku
|
| City |
Kyoto |
| State/province |
Kyoto |
| ZIP/Postal code |
606-8502 |
| Country |
Japan |
| |
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| Platforms (3) |
| GPL6555 |
Kyoto University Custom Agilent Ciona intestinails 242K Tiling Array No.1 (of 2) |
| GPL6556 |
Kyoto University Custom Agilent Ciona intestinails 242K Tiling Array No.2 (of 2) |
| GPL8993 |
Kyoto University Custom Agilent Ciona intestinalis 1M Tiling Array |
|
| Samples (3) |
| GSM441272 |
Tbx6b ChIP-chip on Ciona intestinalis embryo (early gastrula) Sample 1, Array 1 |
| GSM441273 |
Tbx6b ChIP-chip on Ciona intestinalis embryo (early gastrula) Sample 1, Array 2 |
| GSM441274 |
Tbx6b ChIP-chip on Ciona intestinalis embryo (early gastrula) Sample 2 |
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| This SubSeries is part of SuperSeries: |
| GSE17976 |
ChIP-chip analysis of the Ciona intestinalis embryo |
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| Relations |
| BioProject |
PRJNA123639 |
