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Platform GPL6556 Query DataSets for GPL6556
Status Public on Sep 02, 2009
Title Kyoto University Custom Agilent Ciona intestinails 242K Tiling Array No.2 (of 2)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Ciona intestinalis
Manufacturer Agilent
Manufacture protocol The microarray was manufactured by Agilent Technologies.
The details can be found in their web site http://www.chem.agilent.com/Scripts/PCol.asp?lPage=494
 
 
Contributor(s) Satou Y
Submission date Mar 06, 2008
Last update date Sep 02, 2009
Contact name Atsushi Kubo
Organization name Kyoto University
Department Department of zoology, Graduate School of Science
Street address Sakyo-ku
City Kyoto
State/province Kyoto
ZIP/Postal code 606-8502
Country Japan
 
Samples (17) GSM271903, GSM271905, GSM300071, GSM300475, GSM325774, GSM326037 
Series (13)
GSE10803 ZicL ChIP-chip on Ciona intestinalis embryo (early gastrula)
GSE11925 Brachyury ChIP-chip on Ciona intestinalis embryo (early-mid gastrula)
GSE13012 MyoD ChIP-chip on Ciona intestinalis embryo (early-mid gastrula)

Data table header descriptions
ID
Row Feature location:row
Col Feature location:column
SEQUENCE Sequence of oligonucleotide probe
RANGE_GB the GenBank Accession.version
RANGE_START the start position (relative to the RANGE_GB accession)
RANGE_END the end position (relative to the RANGE_GB accession)
RANGE_STRAND

Data table
ID Row Col SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
4 1 4 ATTCAATATTCTAATGTTTTGCAGAAGATAGAACAGTATTTGGTGAGCAGTTATAAGCTT AABS01000035.1 110481 110540 -
5 1 5 TATGTTCATACACCTCATGCCGGCTTACGAGTTAACAAGTATTTACTTTGTGGGTGATTA AABS01000831.1 14172 14231 +
6 1 6 TCTATTTATCGCTACATAAACGCACTGAGACAAAGACAATATTTTTTATTTAAACTCTGG AABS01000863.1 13194 13253 -
7 1 7 AATCAACTGTGCTATGGCGCCGGACCTTTGATCAGCACTGAGCAGCCAAGTCTAGGCGCC AABS01000199.1 95581 95640 -
8 1 8 CCTCACGACTCCTAAAGATCGTTGTTAATTGTTTAAAATACAATCAGGATATTTAGATAT AABS01000119.1 78837 78896 -
9 1 9 ATGATATTTGTTCCTTCACGGTAAAGAACTTATTTGCCTTGTTCTCGCAAGTAAACCCAA AABS01000199.1 22589 22648 +
10 1 10 CTTAAGATATACATTTCACATAGCGGTTTATGGTAGGGTGGGGGGTGAGGAAGATGAGAC AABS01000373.1 71861 71920 -
11 1 11 ATAAACCAAACTTTTTTCTTCAAAGAAATGAATAAAATGAAATCCTTGTAAGAGTTACAC AABS01000006.1 672310 672369 -
12 1 12 GACATGGCCAGCTACCAACATGGACATGGCCAACTACCAACATGGACATGGCCAGCTACC AABS01000387.1 4084 4143 -
13 1 13 AAATTTTAAAGTGTGCCTAAAGGTACATAGCTGTCCCATATACCGTGTACTTATTTTTTT AABS01000086.1 110186 110245 -
14 1 14 TATAGTTGGTTTAGGTTATACCGTAAGCAGATATGGGTCGGCAAACAGAATAAAAACATG AABS01000423.1 26034 26093 -
15 1 15 CTTAAGCGCCAAACTATAACTTTACTCGTCACCTGCTGGTACAAGCAATGCGTGGCCGAA AABS01000745.1 19995 20054 +
16 1 16 CCAAAAACATCACACAAAATGCAAAGGAAAATCAAATACTTCATTTATAATGCTAATAAA AABS01000006.1 282833 282892 +
17 1 17 TTTAAAACCACAGACCAGGCTGAGATATTTAGACACACATTCCTGTGAAACAAATCCAAC AABS01000690.1 10948 11007 -
18 1 18 AGAGAGAGAAAGAACTTCGCCTTAAGTACACGGGAATCCCCTTATTTTGTCCCGCGTTTA AABS01000014.1 24510 24569 +
19 1 19 TCATTATAAAATCCTATTCAGGCCGCCTTCATCATAGTGGTTACAATTAGCCATTTATTC AABS01000125.1 108543 108602 +
20 1 20 GCCAGGATTATTTTAAATGTTTGTTGATTTGTAAAAAAAAACTGGTGAAGTTCAAAAATA AABS01000168.1 190221 190280 +
21 1 21 GAAGCATGTTTACTACAGTCTACTGGCAGATAAATTAATCGAATTACTTTTCAAAGTCAT AABS01000035.1 145232 145291 -
22 1 22 GTTTGTCGTATCTCGGATTAATGAGCTTGCGTTTAAAGCTAAAACCAATGTAATATCGAT AABS01000239.1 34138 34197 -
23 1 23 TCTAACTTATTTATCGTCTTGGAGGGACAACGACAGTCGTGTATAGCAACAGTTTTCTGT AABS01000092.1 75764 75823 -

Total number of rows: 241700

Table truncated, full table size 24683 Kbytes.




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