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| Status |
Public on Jun 27, 2021 |
| Title |
The transcriptome of gadE, hdeA, or hdeD null strains compared to wild-type of E. coli under minimum medium conditions |
| Platform organisms |
Escherichia coli O157:H7 str. EDL933; Escherichia coli CFT073; Escherichia coli O157:H7 str. Sakai; Escherichia coli str. K-12 substr. MG1655 |
| Sample organism |
Escherichia coli BW25113 |
| Experiment type |
Expression profiling by array
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| Summary |
To compare transcriptional profiling of a gadE-, hdeA-, or hdeD- deficient strain to wild type in E. coli under minimum medium conditions. These genes are included in the GAD cluster genes, which are involved in the glutamic acid-dependent acid resistance (GAD) in E. coli. Goal was to determine the GadE, HdeA, or HdeD regulon in E. coli. Biological replicates: 2 replicates.
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| Overall design |
To compare transcriptional profiling of a gadE-, hdeA-, or hdeD- deficient strain to wild type in E. coli under minimum medium conditions. Biological replicates: 2 replicates.
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| Contributor(s) |
Yamamoto K, Yamanaka Y |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Jun 26, 2021 |
| Last update date |
Jun 29, 2021 |
| Contact name |
Kaneyoshi Yamamoto |
| E-mail(s) |
kanyamam@hosei.ac.jp
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| Organization name |
Hosei University
|
| Department |
Frontier Bioscience
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| Street address |
3-7-2 Kajinocho
|
| City |
Koganei |
| State/province |
Tokyo |
| ZIP/Postal code |
1848584 |
| Country |
Japan |
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| Platforms (1) |
| GPL13359 |
Agilent-020097 E. coli Gene Expression Microarray (Probe Name version) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA741669 |
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