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Status
Public on Apr 01, 2011
Title
Agilent-020097 E. coli Gene Expression Microarray (Probe Name version)
Technology type
in situ oligonucleotide
Distribution
commercial
Organisms
Escherichia coli O157:H7 str. EDL933 ; Escherichia coli CFT073 ; Escherichia coli O157:H7 str. Sakai ; Escherichia coli str. K-12 substr. MG1655 Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
E. coli (K12-MG1655, CFT073, O157-H7 EDL933, O157-H7 VT2-Sakai) Oligo Microarray
Submission date
Apr 01, 2011
Last update date
Aug 11, 2011
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (203)
GSM700471 , GSM700472 , GSM700473 , GSM700474 , GSM700475 , GSM700476
GSM709412 ,
GSM709533 ,
GSM709568 ,
GSM709578 ,
GSM709579 ,
GSM709580 ,
GSM709599 ,
GSM709600 ,
GSM777101 ,
GSM777102 ,
GSM777103 ,
GSM777104 ,
GSM777105 ,
GSM777106 ,
GSM777107 ,
GSM777108 ,
GSM777109 ,
GSM777110 ,
GSM777111 ,
GSM777112 ,
GSM777113 ,
GSM777114 ,
GSM777115 ,
GSM777116 ,
GSM777117 ,
GSM777118 ,
GSM777119 ,
GSM777120 ,
GSM777121 ,
GSM777122 ,
GSM777123 ,
GSM777124 ,
GSM1081382 ,
GSM1081383 ,
GSM1081384 ,
GSM1081385 ,
GSM1081386 ,
GSM1081387 ,
GSM1121567 ,
GSM1121568 ,
GSM1121569 ,
GSM1121570 ,
GSM1121571 ,
GSM1121572 ,
GSM1121573 ,
GSM1121574 ,
GSM1121575 ,
GSM1121576 ,
GSM1121577 ,
GSM1121578 ,
GSM1121579 ,
GSM1121580 ,
GSM1121581 ,
GSM1121582 ,
GSM1130592 ,
GSM1130593 ,
GSM1130594 ,
GSM1130595 ,
GSM1249153 ,
GSM1249154 ,
GSM1249155 ,
GSM1249156 ,
GSM1249157 ,
GSM1249158 ,
GSM1249159 ,
GSM1249160 ,
GSM1249161 ,
GSM1249162 ,
GSM1249163 ,
GSM1249164 ,
GSM1349621 ,
GSM1349622 ,
GSM1349623 ,
GSM1349624 ,
GSM1349625 ,
GSM1349626 ,
GSM1349627 ,
GSM1349628 ,
GSM1535872 ,
GSM1535873 ,
GSM1535874 ,
GSM1535875 ,
GSM1535876 ,
GSM2091155 ,
GSM2091156 ,
GSM2091157 ,
GSM2091158 ,
GSM2091159 ,
GSM2091160 ,
GSM2096462 ,
GSM2096463 ,
GSM2096464 ,
GSM2096465 ,
GSM2096466 ,
GSM2096467 ,
GSM2138444 ,
GSM2138445 ,
GSM2138446 ,
GSM2138447 ,
GSM2138448 ,
GSM2138449 ,
GSM2138450 ,
GSM2138451 ,
GSM2138452 ,
GSM2138453 ,
GSM2138454 ,
GSM2138455 ,
GSM2138456 ,
GSM2335760 ,
GSM2335761 ,
GSM2335762 ,
GSM2335763 ,
GSM2335764 ,
GSM2335765 ,
GSM2335766 ,
GSM2335767 ,
GSM2335768 ,
GSM2335769 ,
GSM2335770 ,
GSM2335771 ,
GSM2335772 ,
GSM2335773 ,
GSM2335774 ,
GSM2335775 ,
GSM2649416 ,
GSM2649417 ,
GSM2649418 ,
GSM2649419 ,
GSM2649420 ,
GSM2649421 ,
GSM2649422 ,
GSM2649423 ,
GSM2649424 ,
GSM2649425 ,
GSM2649426 ,
GSM2649427 ,
GSM2649428 ,
GSM2649429 ,
GSM2649430 ,
GSM2649431 ,
GSM2844065 ,
GSM2844066 ,
GSM2844067 ,
GSM2844068 ,
GSM2844069 ,
GSM2844070 ,
GSM2844071 ,
GSM2844072 ,
GSM2844073 ,
GSM2844074 ,
GSM2844075 ,
GSM3069898 ,
GSM3069899 ,
GSM3069900 ,
GSM3069901 ,
GSM3069902 ,
GSM3069903 ,
GSM3227815 ,
GSM3227816 ,
GSM3227817 ,
GSM3227818 ,
GSM3227819 ,
GSM3227820 ,
GSM3227821 ,
GSM3227822 ,
GSM5401972 ,
GSM5401973 ,
GSM5401974 ,
GSM5401975 ,
GSM5401976 ,
GSM5401977 ,
GSM5501743 ,
GSM5501744 ,
GSM6245875 ,
GSM6245876 ,
GSM6245877 ,
GSM6245878 ,
GSM6245879 ,
GSM6245880 ,
GSM6245881 ,
GSM6245882 ,
GSM6245883 ,
GSM6245884 ,
GSM6245885 ,
GSM6245886 ,
GSM6245887 ,
GSM6245888 ,
GSM6245889 ,
GSM6245890 ,
GSM6245891 ,
GSM6245892 ,
GSM6245893 ,
GSM6245894 ,
GSM6245895 ,
GSM6245896 ,
GSM6245897 ,
GSM6245898 Series (21)
GSE28320 Characterization of Lactobacillus Sigma Factors using a Temperature Sensitive E. coli Sigma70 Mutant
GSE28630 The YbjN regulon in Escherichia coli
GSE31333 Elucidation and validation of new targets of the global regulator PdhR in Escherichia coli
GSE44258 Construction of Reusable Plasmid Libraries for Strain Construction
GSE45979 A HUS-associated STEC expressing a dicA transcriptional module is related to gene network dysregulation in Caco-2
GSE46455 Comparison between wild type E. coli and adhE (alcohol dehydrogenase) mutants, grown under anaerobic condition
GSE51611 Unravelling osmotololerance in Escherichia coli using a pseudosexual model system
GSE55972 Effect of Titanium dioxide nanoparticles on Escherichia coli K12 MG1655 genes expression
GSE62898 Control of the E. coli SOS regulon expression by intracellular dNTP pool changes
GSE79305 DNA Microarray of Global Transcription Factor Mutant Reveals Membrane-Related Proteins Involved in n-Butanol Tolerance in Escherichia coli
GSE79509 Enterohemorrhagic Escherichia coli: impact of short chain fatty acid treatment on virulence gene expression
GSE80827 Transcriptional Changes in Escherichia coli Upon Treatment with (-)-Roemerine
GSE87627 Global gene expression profiling and antibiotic susceptibility after repeated exposure to the carbon monoxide-releasing molecule-2 (CORM-2) in multidrug-resistant ESBL-producing uropathogenic Escherichia coli
GSE99661 Transcriptional alterations of virulence-associated genes in extended spectrum beta-lactamase (ESBL)-producing uropathogenic Escherichia coli during morphologic transitions induced by ineffective antibiotics
GSE106628 To compare the transcriptome of ompR null strains with wild-type strain of E. coli during acid or osmotic stress
GSE106630 To compare the transcriptome of ompR null strains with wild-type strain of E. coli and S. Typhimurium during stress
GSE112421 In vivo transcriptome analysis of avian pathogenic Escherichia coli under the control of RstA/RstB two-component regulatory system
GSE116304 E. coli transcriptome-level alterations upon antimicrobial peptide exposure
GSE178954 The transcriptome of gadE, hdeA, or hdeD null strains compared to wild-type of E. coli under minimum medium conditions
GSE181402 The FimZ regulon of E. coli in the stationary phase
GSE206196 Transcriptomic analysis of homoserine-evolved MG1655 strain (wild type) and of homoserine -treated wild type, mutant deleted for thrL and mutant bearing thrL* allele
Relations Alternative to
GPL13360
Data table header descriptions ID Agilent feature number
SPOT_ID Spot identifier
CONTROL_TYPE Control type
LOCUSLINK_ID LocuslinkID
ORF Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
Data table ID SPOT_ID CONTROL_TYPE LOCUSLINK_ID ORF GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE GE_BrightCorner
--GE_BrightCorner
pos
DarkCorner
--DarkCorner
pos
(-)3xSLv1
--(-)3xSLv1
neg
A_07_P030071
cmr|c_2962|asap|ABR-0079106
FALSE
cmr|c_2962|asap|ABR-0079106
unmapped
Putative PTS system IIBC component yfeV [c_2962]
GTTTATCTGGCGTTAATGGACAGCCAGGGATTCAACAGCTTATTTCCCATCCTTTCAATG
A_07_P046244
FALSE
961226
Z4877 putative phosphotransferase system enzyme subunit
cmr|Z4877|asap|ABH-0028530
unmapped
putative phosphotransferase system enzyme subunit [Z4877]
ATTGCTACCAAAATCGCGCCGTTTATTACCGGAATGGCGAAAGACGTTAACTTCAAATTT
A_07_P010256
FALSE
944756
mokC regulatory protein for HokC, overlaps CDS of hokC
cmr|b0018|asap|ABE-0047278|asap|ABE-0000064
chr:16829-16770
Gef protein interferes with membrane function when in excess [b0018]
GAGAAAAGACCTCTGTGAGGTTCACATCCGAACTGGCCAGACGGAGGTTGCTGTTTTCAC
A_07_P007924
FALSE
946425
proB gamma-glutamate kinase
cmr|b0242|asap|ABE-0000830
chr:259989-260048
gamma-glutamate kinase [b0242]
GO:0005737(cytoplasm)|GO:0006561(proline biosynthetic process)
TAACAATATCGTTCCGGTAATCAATGAGAACGATGCTGTCGCTACGGCAGAGATTAAGGT
A_07_P033036
cmr|c_3566|asap|ABR-0079729
FALSE
cmr|c_3566|asap|ABR-0079729
unmapped
Hypothetical protein [c_3566]
TGGATTCTGCTGATTAATGCCACGATCTATCTTACTCTGGGAATTTGTAGCGGACGTTTC
A_07_P062362
FALSE
912642
ECs1250 C4-type zinc finger protein (TraR family)
cmr|ECs1250|asap|ACA-0131178
unmapped
C4-type zinc finger protein [ECs1250]
AATCTCTCCCTGCAAAAATACAAATCCGATAGTAATGCCCCATCTGCTACTCATTGTTGC
A_07_P043700
FALSE
957235
yahI putative carbamate kinase
cmr|Z0412|asap|ABH-0024301
unmapped
putative kinase [Z0412]
GTGAAAGCCAGCGTGACGAATTACAAAAGGCAAACCCTGACTGGCGTTTTGTTGAAGATG
A_07_P058326
FALSE
912946
ECs1795 putative portal protein
cmr|ECs1795|cmr|ECs2248|cmr|ECs1975|asap|ACA-0131753
unmapped
putative portal protein [ECs1795]
CACTGCAACAGTATGACCGAAGATAAACCCGGAGAAGCTCATTCATCAGCCTGGACCCTG
A_07_P049983
FALSE
960386
Z5294 hypothetical protein
cmr|Z5294|asap|ABH-0028920
unmapped
orf Unknown function [Z5294]
CAATTTGCATATCAAATGGTTAATTTTTGCACAGGACTGGTGGGTTCGGAACGGACTTTC
A_07_P054674
cmr|ECs2229
FALSE
cmr|ECs2229
unmapped
hypothetical protein [ECs2229]
AAATATCACAATGTAAGTTTTCTGTTAATACGGAGAGCCTTCAGTGTCCATCCGAGGCGG
A_07_P038465
cmr|c_1548|asap|ABR-0077658
FALSE
cmr|c_1548|asap|ABR-0077658
unmapped
Putative Regulatory protein CII of bacteriophage [c_1548]
ACATCAGTCCGATTAGCAGGGCTTTTAAGTATGCGCTTGATGGACTCACCAATAAAAAAC
A_07_P020729
FALSE
946151
hdhA 7-alpha-hydroxysteroid dehydrogenase, NAD-dependent
cmr|b1619|asap|ABE-0005419
chr:1695470-1695411
NAD-dependent 7alpha-hydroxysteroid dehydrogenase, dehydroxylation of bile acids [b1619]
GO:0005737(cytoplasm)
TCCGTTATTACACCAGAAATTGAACAAAAAATGTTACAGCACACGCCGATCAGACGTCTG
A_07_P031938
cmr|c_2526|cmr|c_4570|asap|ABR-0078659|asap|ABR-0080753
FALSE
cmr|c_2526|cmr|c_4570|asap|ABR-0078659|asap|ABR-0080753
unmapped
Hypothetical protein yafZ [c_2526]
TTATTCTGCTCAACTCCCATGACGGTTCATCCAGCTACCAGATGTTACCCGGATATTTTC
A_07_P052586
FALSE
961875
yecH hypothetical protein
cmr|Z2962|asap|ABH-0026701
unmapped
orf, hypothetical protein [Z2962]
CGTTTCTGGCAGCAAAAGGCAAATTTATACCTTCAGAAGAAGGTTTTTCGACCGATCAGA
A_07_P007151
FALSE
945830
oppA oligopeptide transporter subunit
cmr|b1243|asap|ABE-0004172
chr:1300778-1300837
oligopeptide transport; periplasmic binding protein [b1243]
GO:0000270(peptidoglycan metabolic process)|GO:0006457(protein folding)|GO:0009274(peptidoglycan-based cell wall)|GO:0042597(periplasmic space)
ACCGGCAAAGATCCGCTGGATAATACCTATACCCGGAATATGTACATTGTGAAGCACTAA
A_07_P051831
FALSE
960188
yijE hypothetical protein
cmr|Z5498|asap|ABH-0029104
unmapped
orf, hypothetical protein [Z5498]
GAGTTATAGCTGGATTTTCATGAAGCAAGTCACCAGCTACATCGGTGCCTTCGACTTTAC
A_07_P057969
FALSE
914852
metH B12-dependent methionine synthase
cmr|ECs4937|asap|ACA-0135049
unmapped
B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase [ECs4937]
TTGAAGCCAGCATCGAAACTCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCT
10751 2364 Kbytes .Supplementary data files not provided
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