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Series GSE17913 Query DataSets for GSE17913
Status Public on Feb 15, 2010
Title Effects of Cigarette Smoke on the Human Oral Mucosal Transcriptome
Organism Homo sapiens
Experiment type Expression profiling by array
Summary 40 current smokers and 40 age- and gender- matched never smokers underwent buccal biopsies.The study had four objectives: (a) to define the effects of smoking on the transcriptome of oral epithelial cells; (b) to determine if any of the effects of tobacco smoke on the transcriptome are gender-dependent; (c) to compare the effects of tobacco smoke exposure on the transcriptome in oral v. bronchial epithelium and (d) to identify agents with the potential to suppress the effects of tobacco smoke on the transcriptome.
We used microarrays to provide new insights into the carcinogenic effects of tobacco smoke and offer insights that may prove useful in developing preventive strategies.
 
Overall design 40 never smokers (<100 cigarettes per lifetime) and 40 active smokers (≥ 15 pack year exposure) were recruited. Subjects were age- and gender-matched. Eligible subjects were healthy volunteers recruited from the community and the hospital. Subjects were excluded if they had gross evidence of oral inflammation a history of heavy alcohol consumption or recent use of nonsteroidal anti-inflammatory drugs or other anti-inflammatory medications. The study was approved by the Weill Cornell Medical College Institutional Review Board and the Clinical and Translational Research Center. All subjects provided written informed consent for participation. After topical anestesia 5-mm punch biopsies were obtained from grossly normal appearing buccal mucosa. One sample was excluded from the study based on a quality measure leaving 79 for analysis and deposited here.
 
Contributor(s) Gumus ZH
Citation(s) 20179299
Submission date Sep 01, 2009
Last update date Mar 25, 2019
Contact name Zeynep H. Gumus
E-mail(s) zeg2002@med.cornell.edu
Organization name Cornell University
Department Physiology and Biophysics
Street address 1300 York Ave
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Platforms (1)
GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Samples (79)
GSM447398 Never smoker male study #100
GSM447399 Never smoker male study #102
GSM447400 Never smoker female study #105
Relations
BioProject PRJNA120057

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE17913_RAW.tar 373.1 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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